JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRPL38_chr17_75893644_75909884	0/0	c0007	1143	2	0	0	0	0	2	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	c0008	1143	2	0	2	0	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	c0009	1143	1	0	0	1	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	c0010	1143	1	1	0	0	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	c0011	1143	1	1	0	0	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	c0012	1143	1	0	0	1	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	c0013	1143	1	1	0	0	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	c0014	1143	1	1	0	0	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL39_chr21_25580656_25612481	0/1	c0001	1017	206	35	42	100	10	18	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	0/0	c0002	1017	92	4	10	63	2	13	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	0/0	c0003	1017	63	24	13	23	0	3	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	1/0	c0004	1017	25	20	3	1	0	0	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	0/0	c0005	1017	5	4	1	0	0	0	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	0/0	c0006	1017	2	1	1	0	0	0	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	0/0	c0007	1017	2	2	0	0	0	0	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	0/0	c0008	1017	2	2	0	0	0	0	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	0/0	c0009	1017	1	0	0	1	0	0	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	0/0	c0010	1017	1	1	0	0	0	0	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	0/0	c0011	1017	1	1	0	0	0	0	copy fasta	MRPL39	chr21	25580656	25612481
MRPL3_chr3_131457212_131507971	1/1	c0001	1047	337	78	62	142	13	40	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	c0002	1047	20	0	0	18	0	2	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	c0003	1047	11	0	2	8	1	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	c0004	1047	7	6	1	0	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	c0005	1047	6	6	0	0	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	c0006	1047	2	0	2	0	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	c0007	1047	2	0	0	2	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	c0008	1047	1	0	0	1	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	c0009	1047	1	1	0	0	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	c0010	1047	1	0	0	1	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	c0011	1047	1	1	0	0	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	c0012	1047	1	0	1	0	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL40_chr22_19427545_19441075	1/1	c0001	621	318	47	65	165	7	32	copy fasta	MRPL40	chr22	19427545	19441075
MRPL40_chr22_19427545_19441075	0/0	c0002	621	69	36	3	21	0	9	copy fasta	MRPL40	chr22	19427545	19441075
MRPL40_chr22_19427545_19441075	0/0	c0003	621	32	7	10	14	1	0	copy fasta	MRPL40	chr22	19427545	19441075
MRPL40_chr22_19427545_19441075	0/0	c0004	621	8	0	0	8	0	0	copy fasta	MRPL40	chr22	19427545	19441075
MRPL40_chr22_19427545_19441075	0/0	c0005	621	1	0	0	0	0	1	copy fasta	MRPL40	chr22	19427545	19441075
MRPL41_chr9_137546879_137557555	1/1	c0001	414	397	89	73	175	12	46	copy fasta	MRPL41	chr9	137546879	137557555
MRPL41_chr9_137546879_137557555	0/0	c0002	414	8	5	1	0	0	2	copy fasta	MRPL41	chr9	137546879	137557555
MRPL41_chr9_137546879_137557555	0/0	c0003	414	3	0	0	3	0	0	copy fasta	MRPL41	chr9	137546879	137557555
MRPL42_chr12_93462514_93521214	1/1	c0001	429	386	92	74	168	16	34	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	c0002	429	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	c0003	429	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL43_chr10_100981269_100992497	1/1	c0001	480	246	55	60	86	13	30	copy fasta	MRPL43	chr10	100981269	100992497
MRPL43_chr10_100981269_100992497	0/0	c0002	480	132	31	14	74	3	10	copy fasta	MRPL43	chr10	100981269	100992497
MRPL43_chr10_100981269_100992497	0/0	c0003	480	2	2	0	0	0	0	copy fasta	MRPL43	chr10	100981269	100992497
MRPL44_chr2_223952463_223972714	1/1	c0001	999	396	74	67	195	15	43	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	c0002	999	8	7	0	0	0	1	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	c0003	999	7	7	0	0	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	c0004	999	6	0	4	0	1	1	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	c0005	999	2	0	0	2	0	0	copy fasta	MRPL44	chr2	223952463	223972714