JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRPL44_chr2_223952463_223972714	0/0	c0006	999	1	0	0	0	0	1	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	c0007	999	1	1	0	0	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	c0008	999	1	1	0	0	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	c0009	999	1	0	0	1	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL44_chr2_223952463_223972714	0/0	c0010	967	1	0	1	0	0	0	copy fasta	MRPL44	chr2	223952463	223972714
MRPL45_chr17_38292168_38328211	0/1	c0001	921	170	18	35	89	7	20	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	c0002	921	49	45	4	0	0	0	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	c0003	921	32	25	5	0	0	2	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	c0004	921	23	1	0	20	0	2	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	c0005	921	9	1	7	0	1	0	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	c0006	921	1	1	0	0	0	0	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	c0007	921	1	0	1	0	0	0	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	c0008	921	1	1	0	0	0	0	copy fasta	MRPL45	chr17	38292168	38328211
MRPL45_chr17_38292168_38328211	0/0	c0009	921	1	0	0	1	0	0	copy fasta	MRPL45	chr17	38292168	38328211
MRPL46_chr15_88454478_88472388	1/1	c0001	840	245	61	51	89	11	31	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	c0002	840	24	21	2	1	0	0	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	c0003	840	10	7	1	0	1	1	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	c0004	840	5	4	1	0	0	0	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	c0005	840	2	0	2	0	0	0	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	c0006	840	2	2	0	0	0	0	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	c0007	840	2	1	1	0	0	0	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	c0008	840	1	1	0	0	0	0	copy fasta	MRPL46	chr15	88454478	88472388
MRPL46_chr15_88454478_88472388	0/0	c0009	840	1	1	0	0	0	0	copy fasta	MRPL46	chr15	88454478	88472388
MRPL47_chr3_179583285_179609638	1/1	c0001	753	326	75	62	151	7	29	copy fasta	MRPL47	chr3	179583285	179609638
MRPL47_chr3_179583285_179609638	0/0	c0002	753	53	8	7	26	3	9	copy fasta	MRPL47	chr3	179583285	179609638
MRPL47_chr3_179583285_179609638	0/0	c0003	753	8	7	1	0	0	0	copy fasta	MRPL47	chr3	179583285	179609638
MRPL47_chr3_179583285_179609638	0/0	c0004	753	1	0	0	1	0	0	copy fasta	MRPL47	chr3	179583285	179609638
MRPL48_chr11_73782874_73870133	1/1	c0001	639	328	86	59	129	10	42	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	c0002	639	4	3	1	0	0	0	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	c0003	639	1	0	0	1	0	0	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	c0004	639	1	1	0	0	0	0	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	c0005	639	1	1	0	0	0	0	copy fasta	MRPL48	chr11	73782874	73870133
MRPL48_chr11_73782874_73870133	0/0	c0006	639	1	1	0	0	0	0	copy fasta	MRPL48	chr11	73782874	73870133
MRPL49_chr11_65117321_65132371	1/1	c0001	501	387	95	71	161	16	42	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	c0002	501	6	0	0	6	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	c0003	501	4	3	1	0	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL49_chr11_65117321_65132371	0/0	c0004	501	1	0	0	1	0	0	copy fasta	MRPL49	chr11	65117321	65132371
MRPL4_chr19_10247214_10265055	1/1	c0001	936	304	80	71	97	16	38	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	c0002	936	86	2	6	71	0	7	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	c0003	936	14	0	0	14	0	0	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	c0004	936	4	4	0	0	0	0	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	c0005	936	3	0	1	0	0	2	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	c0006	936	2	2	0	0	0	0	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	c0007	936	1	0	0	1	0	0	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	c0008	936	1	0	0	1	0	0	copy fasta	MRPL4	chr19	10247214	10265055
MRPL4_chr19_10247214_10265055	0/0	c0009	936	1	0	0	0	0	1	copy fasta	MRPL4	chr19	10247214	10265055
MRPL50_chr9_101382633_101403618	1/1	c0001	477	414	93	75	185	17	42	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	c0002	477	38	0	7	27	1	3	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	c0003	477	3	0	0	3	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	c0004	477	2	0	0	2	0	0	copy fasta	MRPL50	chr9	101382633	101403618