JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRPL50_chr9_101382633_101403618	0/0	c0005	477	2	0	0	2	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	c0006	477	2	0	0	2	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	c0007	477	1	1	0	0	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	c0008	477	1	0	0	1	0	0	copy fasta	MRPL50	chr9	101382633	101403618
MRPL50_chr9_101382633_101403618	0/0	c0009	477	1	0	0	0	0	1	copy fasta	MRPL50	chr9	101382633	101403618
MRPL51_chr12_6486886_6498262	1/1	c0001	387	435	96	78	202	11	46	copy fasta	MRPL51	chr12	6486886	6498262
MRPL51_chr12_6486886_6498262	0/0	c0002	387	1	0	0	0	1	0	copy fasta	MRPL51	chr12	6486886	6498262
MRPL52_chr14_22824887_22840037	0/0	c0001	369	243	56	36	127	3	21	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/1	c0002	369	174	24	38	84	8	19	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	1/0	c0003	369	39	18	10	1	3	6	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/0	c0004	369	1	0	0	0	1	0	copy fasta	MRPL52	chr14	22824887	22840037
MRPL52_chr14_22824887_22840037	0/0	c0005	369	1	0	0	0	1	0	copy fasta	MRPL52	chr14	22824887	22840037
MRPL53_chr2_74466982_74477680	0/1	c0001	339	247	74	25	134	2	11	copy fasta	MRPL53	chr2	74466982	74477680
MRPL53_chr2_74466982_74477680	1/0	c0002	339	130	20	43	31	14	21	copy fasta	MRPL53	chr2	74466982	74477680
MRPL53_chr2_74466982_74477680	0/0	c0003	339	2	2	0	0	0	0	copy fasta	MRPL53	chr2	74466982	74477680
MRPL53_chr2_74466982_74477680	0/0	c0004	339	1	0	1	0	0	0	copy fasta	MRPL53	chr2	74466982	74477680
MRPL53_chr2_74466982_74477680	0/0	c0005	339	1	0	1	0	0	0	copy fasta	MRPL53	chr2	74466982	74477680
MRPL53_chr2_74466982_74477680	0/0	c0006	339	1	0	0	1	0	0	copy fasta	MRPL53	chr2	74466982	74477680
MRPL53_chr2_74466982_74477680	0/0	c0007	339	1	0	0	1	0	0	copy fasta	MRPL53	chr2	74466982	74477680
MRPL53_chr2_74466982_74477680	0/0	c0008	339	1	0	0	1	0	0	copy fasta	MRPL53	chr2	74466982	74477680
MRPL54_chr19_3757682_3772565	0/0	c0001	417	279	40	43	155	10	31	copy fasta	MRPL54	chr19	3757682	3772565
MRPL54_chr19_3757682_3772565	1/1	c0002	417	144	49	36	32	8	17	copy fasta	MRPL54	chr19	3757682	3772565
MRPL54_chr19_3757682_3772565	0/0	c0003	417	6	5	1	0	0	0	copy fasta	MRPL54	chr19	3757682	3772565
MRPL54_chr19_3757682_3772565	0/0	c0004	417	2	2	0	0	0	0	copy fasta	MRPL54	chr19	3757682	3772565
MRPL54_chr19_3757682_3772565	0/0	c0005	417	1	0	0	1	0	0	copy fasta	MRPL54	chr19	3757682	3772565
MRPL54_chr19_3757682_3772565	0/0	c0006	417	1	0	0	1	0	0	copy fasta	MRPL54	chr19	3757682	3772565
MRPL54_chr19_3757682_3772565	0/0	c0007	417	1	0	0	1	0	0	copy fasta	MRPL54	chr19	3757682	3772565
MRPL55_chr1_228101685_228114299	1/1	c0001	387	367	65	69	177	12	42	copy fasta	MRPL55	chr1	228101685	228114299
MRPL55_chr1_228101685_228114299	0/0	c0002	387	19	18	1	0	0	0	copy fasta	MRPL55	chr1	228101685	228114299
MRPL55_chr1_228101685_228114299	0/0	c0003	387	7	7	0	0	0	0	copy fasta	MRPL55	chr1	228101685	228114299
MRPL55_chr1_228101685_228114299	0/0	c0004	387	4	4	0	0	0	0	copy fasta	MRPL55	chr1	228101685	228114299
MRPL55_chr1_228101685_228114299	0/0	c0005	387	3	0	0	3	0	0	copy fasta	MRPL55	chr1	228101685	228114299
MRPL55_chr1_228101685_228114299	0/0	c0006	387	2	0	0	2	0	0	copy fasta	MRPL55	chr1	228101685	228114299
MRPL55_chr1_228101685_228114299	0/0	c0007	387	1	0	1	0	0	0	copy fasta	MRPL55	chr1	228101685	228114299
MRPL55_chr1_228101685_228114299	0/0	c0008	387	1	0	1	0	0	0	copy fasta	MRPL55	chr1	228101685	228114299
MRPL57_chr13_21171658_21184084	1/1	c0001	309	408	96	76	176	15	43	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	c0002	309	1	0	0	1	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	c0003	309	1	0	0	1	0	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	c0004	309	1	0	0	0	1	0	copy fasta	MRPL57	chr13	21171658	21184084
MRPL57_chr13_21171658_21184084	0/0	c0005	309	1	0	0	0	0	1	copy fasta	MRPL57	chr13	21171658	21184084
MRPL58_chr17_75007670_75026261	1/0	c0001	621	216	37	35	108	10	25	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/1	c0002	621	117	23	32	38	4	19	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	c0003	621	22	17	2	0	2	1	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	c0004	621	11	11	0	0	0	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	c0005	621	8	0	0	8	0	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	c0006	621	7	7	0	0	0	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	c0007	621	2	1	1	0	0	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	c0008	621	1	0	0	0	0	1	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	c0009	621	1	0	1	0	0	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	c0010	621	1	0	0	1	0	0	copy fasta	MRPL58	chr17	75007670	75026261