JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRPL58_chr17_75007670_75026261	0/0	c0011	621	1	0	0	1	0	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL58_chr17_75007670_75026261	0/0	c0012	621	1	0	1	0	0	0	copy fasta	MRPL58	chr17	75007670	75026261
MRPL9_chr1_151754647_151768496	1/0	c0001	804	136	20	26	62	7	20	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/1	c0002	804	131	46	26	46	4	8	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	c0003	804	92	12	12	57	0	11	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	c0004	804	50	14	10	20	4	2	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	c0005	804	17	4	7	4	1	1	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	c0006	804	3	0	0	3	0	0	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	c0007	804	2	0	0	0	0	2	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	c0008	804	1	0	0	1	0	0	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	c0009	804	1	0	1	0	0	0	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	c0010	804	1	0	0	0	1	0	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	c0011	804	1	0	0	1	0	0	copy fasta	MRPL9	chr1	151754647	151768496
MRPL9_chr1_151754647_151768496	0/0	c0012	804	1	0	0	0	1	0	copy fasta	MRPL9	chr1	151754647	151768496
MRPS10_chr6_42201807_42222861	1/0	c0001	606	281	31	55	144	13	37	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/1	c0002	606	95	44	14	28	2	6	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	c0003	606	19	19	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	c0004	606	3	0	0	3	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	c0005	606	2	2	0	0	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	c0006	606	2	0	1	0	1	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	c0007	606	1	0	0	1	0	0	copy fasta	MRPS10	chr6	42201807	42222861
MRPS10_chr6_42201807_42222861	0/0	c0008	606	1	0	0	0	0	1	copy fasta	MRPS10	chr6	42201807	42222861
MRPS11_chr15_88462708_88485776	1/1	c0001	585	214	71	46	57	12	26	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	c0002	585	19	17	2	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	c0003	585	5	4	0	1	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	c0004	585	2	2	0	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	c0005	585	2	1	1	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	c0006	585	1	0	1	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS11_chr15_88462708_88485776	0/0	c0007	585	1	1	0	0	0	0	copy fasta	MRPS11	chr15	88462708	88485776
MRPS12_chr19_38925944_38938168	1/1	c0001	417	388	69	78	178	14	47	copy fasta	MRPS12	chr19	38925944	38938168
MRPS12_chr19_38925944_38938168	0/0	c0002	417	19	19	0	0	0	0	copy fasta	MRPS12	chr19	38925944	38938168
MRPS12_chr19_38925944_38938168	0/0	c0003	417	5	5	0	0	0	0	copy fasta	MRPS12	chr19	38925944	38938168
MRPS12_chr19_38925944_38938168	0/0	c0004	417	2	2	0	0	0	0	copy fasta	MRPS12	chr19	38925944	38938168
MRPS12_chr19_38925944_38938168	0/0	c0005	417	1	0	0	1	0	0	copy fasta	MRPS12	chr19	38925944	38938168
MRPS12_chr19_38925944_38938168	0/0	c0006	417	1	1	0	0	0	0	copy fasta	MRPS12	chr19	38925944	38938168
MRPS12_chr19_38925944_38938168	0/0	c0007	417	1	0	0	0	0	1	copy fasta	MRPS12	chr19	38925944	38938168
MRPS12_chr19_38925944_38938168	0/0	c0008	417	1	0	0	1	0	0	copy fasta	MRPS12	chr19	38925944	38938168
MRPS14_chr1_175007958_175028425	1/1	c0001	387	389	90	70	172	17	38	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	c0002	387	3	3	0	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	c0003	387	2	0	0	2	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	c0004	387	2	0	0	0	0	2	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	c0005	387	1	1	0	0	0	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS14_chr1_175007958_175028425	0/0	c0006	387	1	0	0	0	1	0	copy fasta	MRPS14	chr1	175007958	175028425
MRPS15_chr1_36450718_36469384	0/1	c0001	774	409	93	62	201	14	38	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	1/0	c0002	774	6	1	1	0	2	1	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	c0003	774	3	3	0	0	0	0	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	c0004	774	3	2	1	0	0	0	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	c0005	774	2	0	0	0	2	0	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	c0006	774	1	1	0	0	0	0	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	c0007	774	1	0	0	1	0	0	copy fasta	MRPS15	chr1	36450718	36469384