JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRPS15_chr1_36450718_36469384	0/0	c0008	774	1	0	0	0	0	1	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	c0009	774	1	0	0	1	0	0	copy fasta	MRPS15	chr1	36450718	36469384
MRPS15_chr1_36450718_36469384	0/0	c0010	774	1	0	0	1	0	0	copy fasta	MRPS15	chr1	36450718	36469384
MRPS16_chr10_73243849_73257644	1/1	c0001	414	330	76	34	178	2	38	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	c0002	414	13	11	2	0	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS16_chr10_73243849_73257644	0/0	c0003	414	1	1	0	0	0	0	copy fasta	MRPS16	chr10	73243849	73257644
MRPS17_chr7_55946877_55961500	1/1	c0001	393	396	80	66	190	17	41	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	c0002	393	24	14	2	7	0	1	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	c0003	393	1	1	0	0	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	c0004	393	1	0	0	0	1	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	c0005	393	1	1	0	0	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS17_chr7_55946877_55961500	0/0	c0006	393	1	0	0	1	0	0	copy fasta	MRPS17	chr7	55946877	55961500
MRPS18A_chr6_43666202_43692791	1/1	c0001	591	372	84	50	179	16	41	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18A_chr6_43666202_43692791	0/0	c0002	591	5	5	0	0	0	0	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18A_chr6_43666202_43692791	0/0	c0003	591	1	0	0	1	0	0	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18A_chr6_43666202_43692791	0/0	c0004	591	1	0	0	0	0	1	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18A_chr6_43666202_43692791	0/0	c0005	591	1	1	0	0	0	0	copy fasta	MRPS18A	chr6	43666202	43692791
MRPS18B_chr6_30612840_30631392	0/1	c0001	777	400	83	82	170	18	46	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	c0002	777	20	8	2	10	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	c0003	777	1	1	0	0	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	c0004	777	1	0	0	1	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18B_chr6_30612840_30631392	0/0	c0005	777	1	0	0	1	0	0	copy fasta	MRPS18B	chr6	30612840	30631392
MRPS18C_chr4_83451058_83467298	1/1	c0001	429	393	95	70	172	16	38	copy fasta	MRPS18C	chr4	83451058	83467298
MRPS18C_chr4_83451058_83467298	0/0	c0002	429	1	1	0	0	0	0	copy fasta	MRPS18C	chr4	83451058	83467298
MRPS21_chr1_150288861_150313979	0/1	c0001	264	350	69	65	164	9	42	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	0/0	c0002	264	29	24	2	0	2	1	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	0/0	c0003	264	3	0	2	0	0	1	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	1/0	c0004	264	3	0	1	0	1	0	copy fasta	MRPS21	chr1	150288861	150313979
MRPS21_chr1_150288861_150313979	0/0	c0005	264	1	1	0	0	0	0	copy fasta	MRPS21	chr1	150288861	150313979
MRPS22_chr3_139339020_139362129	1/1	c0001	1083	299	79	62	110	12	34	copy fasta	MRPS22	chr3	139339020	139362129
MRPS22_chr3_139339020_139362129	0/0	c0002	1083	4	4	0	0	0	0	copy fasta	MRPS22	chr3	139339020	139362129
MRPS22_chr3_139339020_139362129	0/0	c0003	1083	2	2	0	0	0	0	copy fasta	MRPS22	chr3	139339020	139362129
MRPS22_chr3_139339020_139362129	0/0	c0004	1083	1	0	1	0	0	0	copy fasta	MRPS22	chr3	139339020	139362129
MRPS22_chr3_139339020_139362129	0/0	c0005	1083	1	0	0	0	0	1	copy fasta	MRPS22	chr3	139339020	139362129
MRPS22_chr3_139339020_139362129	0/0	c0006	1083	1	0	0	0	0	1	copy fasta	MRPS22	chr3	139339020	139362129
MRPS22_chr3_139339020_139362129	0/0	c0007	1083	1	0	1	0	0	0	copy fasta	MRPS22	chr3	139339020	139362129
MRPS22_chr3_139339020_139362129	0/0	c0008	1083	1	1	0	0	0	0	copy fasta	MRPS22	chr3	139339020	139362129
MRPS23_chr17_57829781_57855044	1/1	c0001	573	385	88	75	169	14	37	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	c0002	573	6	5	1	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	c0003	573	3	0	0	2	0	1	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	c0004	573	1	1	0	0	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS23_chr17_57829781_57855044	0/0	c0005	573	1	0	0	1	0	0	copy fasta	MRPS23	chr17	57829781	57855044
MRPS24_chr7_43861558_43874517	1/1	c0001	504	361	75	72	159	17	36	copy fasta	MRPS24	chr7	43861558	43874517
MRPS24_chr7_43861558_43874517	0/0	c0002	504	56	9	8	37	1	1	copy fasta	MRPS24	chr7	43861558	43874517
MRPS24_chr7_43861558_43874517	0/0	c0003	504	7	7	0	0	0	0	copy fasta	MRPS24	chr7	43861558	43874517
MRPS24_chr7_43861558_43874517	0/0	c0004	504	5	5	0	0	0	0	copy fasta	MRPS24	chr7	43861558	43874517
MRPS24_chr7_43861558_43874517	0/0	c0005	504	1	0	0	0	0	1	copy fasta	MRPS24	chr7	43861558	43874517
MRPS25_chr3_15043512_15070315	1/1	c0001	522	366	92	66	144	12	50	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	c0002	522	1	1	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315
MRPS25_chr3_15043512_15070315	0/0	c0003	522	1	1	0	0	0	0	copy fasta	MRPS25	chr3	15043512	15070315