JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRPS26_chr20_3041052_3053250	1/1	c0001	618	435	91	70	205	17	50	copy fasta	MRPS26	chr20	3041052	3053250
MRPS26_chr20_3041052_3053250	0/0	c0002	618	1	0	0	0	1	0	copy fasta	MRPS26	chr20	3041052	3053250
MRPS26_chr20_3041052_3053250	0/0	c0003	618	1	0	0	1	0	0	copy fasta	MRPS26	chr20	3041052	3053250
MRPS26_chr20_3041052_3053250	0/0	c0004	618	1	1	0	0	0	0	copy fasta	MRPS26	chr20	3041052	3053250
MRPS27_chr5_72214403_72325240	1/1	c0001	1245	266	43	48	141	6	26	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	c0002	1245	32	25	3	0	1	3	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	c0003	1245	27	1	13	1	5	7	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	c0004	1245	10	9	1	0	0	0	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	c0005	1245	6	0	5	1	0	0	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	c0006	1245	2	1	0	0	0	1	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	c0007	1245	1	0	0	1	0	0	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	c0008	1245	1	0	0	0	0	1	copy fasta	MRPS27	chr5	72214403	72325240
MRPS27_chr5_72214403_72325240	0/0	c0009	1245	1	1	0	0	0	0	copy fasta	MRPS27	chr5	72214403	72325240
MRPS28_chr8_79913717_80035259	1/1	c0001	564	267	59	55	113	10	28	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	c0002	564	11	10	1	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	c0003	564	10	7	3	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	c0004	564	5	5	0	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	c0005	564	2	2	0	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	c0006	564	1	1	0	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	c0007	564	1	0	1	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	c0008	564	1	1	0	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	c0009	564	1	1	0	0	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS28_chr8_79913717_80035259	0/0	c0010	564	1	0	0	1	0	0	copy fasta	MRPS28	chr8	79913717	80035259
MRPS2_chr9_135495682_135509671	1/1	c0001	891	322	57	57	153	16	37	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	c0002	891	53	27	9	9	0	8	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	c0003	891	13	13	0	0	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	c0004	891	7	0	5	0	1	1	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	c0005	891	3	0	1	0	1	1	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	c0006	891	2	2	0	0	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	c0007	891	1	0	0	0	0	1	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	c0008	891	1	0	0	1	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	c0009	891	1	1	0	0	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	c0010	891	1	0	0	0	0	1	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	c0011	891	1	0	0	0	0	1	copy fasta	MRPS2	chr9	135495682	135509671
MRPS2_chr9_135495682_135509671	0/0	c0012	891	1	0	0	1	0	0	copy fasta	MRPS2	chr9	135495682	135509671
MRPS30_chr5_44803947_44820514	1/0	c0001	1320	224	74	37	79	4	29	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	c0002	1320	161	13	36	88	9	15	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	c0003	1320	2	0	0	2	0	0	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/1	c0004	1320	2	0	0	0	1	0	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	c0005	1320	1	0	1	0	0	0	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	c0006	1320	1	0	1	0	0	0	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	c0007	1320	1	0	0	1	0	0	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	c0008	1320	1	1	0	0	0	0	copy fasta	MRPS30	chr5	44803947	44820514
MRPS30_chr5_44803947_44820514	0/0	c0009	1320	1	0	1	0	0	0	copy fasta	MRPS30	chr5	44803947	44820514
MRPS31_chr13_40724128_40776190	1/1	c0001	1188	284	64	38	146	12	22	copy fasta	MRPS31	chr13	40724128	40776190
MRPS31_chr13_40724128_40776190	0/0	c0002	1188	64	8	7	43	0	6	copy fasta	MRPS31	chr13	40724128	40776190
MRPS31_chr13_40724128_40776190	0/0	c0003	1188	41	5	14	11	2	9	copy fasta	MRPS31	chr13	40724128	40776190
MRPS31_chr13_40724128_40776190	0/0	c0004	1188	12	10	2	0	0	0	copy fasta	MRPS31	chr13	40724128	40776190
MRPS31_chr13_40724128_40776190	0/0	c0005	1188	1	1	0	0	0	0	copy fasta	MRPS31	chr13	40724128	40776190
MRPS31_chr13_40724128_40776190	0/0	c0006	1188	1	0	0	0	0	1	copy fasta	MRPS31	chr13	40724128	40776190