JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRPS31_chr13_40724128_40776190	0/0	c0007	1188	1	0	1	0	0	0	copy fasta	MRPS31	chr13	40724128	40776190
MRPS33_chr7_140997610_141019952	1/1	c0001	321	329	79	66	128	16	38	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	c0002	321	8	8	0	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS33_chr7_140997610_141019952	0/0	c0003	321	3	3	0	0	0	0	copy fasta	MRPS33	chr7	140997610	141019952
MRPS34_chr16_1766895_1778134	1/0	c0001	657	348	92	64	139	11	41	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/1	c0002	657	69	1	7	55	0	5	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/0	c0003	657	11	0	5	0	5	1	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/0	c0004	657	2	2	0	0	0	0	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/0	c0005	657	2	0	1	0	1	0	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/0	c0006	657	2	0	0	0	1	1	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/0	c0007	657	1	0	1	0	0	0	copy fasta	MRPS34	chr16	1766895	1778134
MRPS34_chr16_1766895_1778134	0/0	c0008	657	1	1	0	0	0	0	copy fasta	MRPS34	chr16	1766895	1778134
MRPS35_chr12_27705832_27761295	1/1	c0001	972	283	67	50	130	9	25	copy fasta	MRPS35	chr12	27705832	27761295
MRPS35_chr12_27705832_27761295	0/0	c0002	972	60	0	10	40	3	7	copy fasta	MRPS35	chr12	27705832	27761295
MRPS35_chr12_27705832_27761295	0/0	c0003	972	12	10	2	0	0	0	copy fasta	MRPS35	chr12	27705832	27761295
MRPS35_chr12_27705832_27761295	0/0	c0004	972	1	1	0	0	0	0	copy fasta	MRPS35	chr12	27705832	27761295
MRPS35_chr12_27705832_27761295	0/0	c0005	972	1	0	0	1	0	0	copy fasta	MRPS35	chr12	27705832	27761295
MRPS35_chr12_27705832_27761295	0/0	c0006	972	1	0	0	1	0	0	copy fasta	MRPS35	chr12	27705832	27761295
MRPS36_chr5_69212760_69235158	0/1	c0001	312	363	88	70	151	12	41	copy fasta	MRPS36	chr5	69212760	69235158
MRPS36_chr5_69212760_69235158	0/0	c0002	312	41	2	3	33	0	3	copy fasta	MRPS36	chr5	69212760	69235158
MRPS36_chr5_69212760_69235158	0/0	c0003	312	4	0	0	4	0	0	copy fasta	MRPS36	chr5	69212760	69235158
MRPS36_chr5_69212760_69235158	0/0	c0004	312	1	0	1	0	0	0	copy fasta	MRPS36	chr5	69212760	69235158
MRPS5_chr2_95080369_95126808	1/1	c0001	1293	280	67	54	118	7	32	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	c0002	1293	2	0	0	0	1	1	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	c0003	1293	2	2	0	0	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	c0004	1293	1	0	0	0	0	1	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	c0005	1293	1	0	0	0	0	1	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	c0006	1293	1	1	0	0	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	c0007	1293	1	0	0	1	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	c0008	1293	1	0	0	1	0	0	copy fasta	MRPS5	chr2	95080369	95126808
MRPS5_chr2_95080369_95126808	0/0	c0009	1293	1	0	0	0	0	1	copy fasta	MRPS5	chr2	95080369	95126808
MRPS6_chr21_34068578_34148030	1/1	c0001	378	295	84	66	106	8	29	copy fasta	MRPS6	chr21	34068578	34148030
MRPS6_chr21_34068578_34148030	0/0	c0002	378	1	0	0	0	0	1	copy fasta	MRPS6	chr21	34068578	34148030
MRPS7_chr17_75256879_75271376	0/1	c0001	729	219	31	47	96	11	33	copy fasta	MRPS7	chr17	75256879	75271376
MRPS7_chr17_75256879_75271376	1/0	c0002	729	123	63	18	23	5	13	copy fasta	MRPS7	chr17	75256879	75271376
MRPS7_chr17_75256879_75271376	0/0	c0003	729	1	0	1	0	0	0	copy fasta	MRPS7	chr17	75256879	75271376
MRPS7_chr17_75256879_75271376	0/0	c0004	729	1	0	0	1	0	0	copy fasta	MRPS7	chr17	75256879	75271376
MRPS7_chr17_75256879_75271376	0/0	c0005	729	1	0	0	1	0	0	copy fasta	MRPS7	chr17	75256879	75271376
MRPS7_chr17_75256879_75271376	0/0	c0006	729	1	0	0	1	0	0	copy fasta	MRPS7	chr17	75256879	75271376
MRPS9_chr2_105033069_105104960	0/0	c0001	1191	303	54	40	160	11	38	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/1	c0002	1191	62	13	16	21	4	7	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	c0003	1191	8	8	0	0	0	0	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	1/0	c0004	1191	6	0	4	1	0	0	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	c0005	1191	6	6	0	0	0	0	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	c0006	1191	2	0	2	0	0	0	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	c0007	1191	1	0	0	0	1	0	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	c0008	1191	1	0	0	0	0	1	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	c0009	1191	1	0	1	0	0	0	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	c0010	1191	1	0	0	1	0	0	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	c0011	1191	1	0	0	1	0	0	copy fasta	MRPS9	chr2	105033069	105104960