JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRPS9_chr2_105033069_105104960	0/0	c0012	1191	1	0	1	0	0	0	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/0	c0013	1191	1	1	0	0	0	0	copy fasta	MRPS9	chr2	105033069	105104960
MRRF_chr9_122259882_122336337	1/1	c0001	789	254	65	36	127	4	20	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	c0002	789	4	0	1	3	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	c0003	789	4	4	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	c0004	789	1	0	1	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	c0005	789	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRS2_chr6_24397936_24431190	1/0	c0001	1332	218	72	39	84	5	17	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/1	c0002	1332	97	13	19	44	10	10	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	c0003	1332	49	0	10	35	0	4	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	c0004	1332	49	7	4	32	0	6	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	c0005	1332	7	1	5	0	1	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	c0006	1332	3	1	1	0	0	1	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	c0007	1332	2	0	2	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	c0008	1332	2	2	0	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	c0009	1332	1	0	0	0	0	1	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	c0010	1332	1	1	0	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	c0011	1332	1	0	0	1	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	c0012	1332	1	0	0	0	0	1	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	c0013	1332	1	1	0	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRTFA_chr22_40405289_40641719	1/1	c0001	3096	113	0	26	70	7	8	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0002	3096	36	33	3	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0003	3096	22	13	0	8	1	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0004	3096	18	2	1	11	2	2	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0005	3096	11	3	4	0	1	3	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0006	3096	8	3	2	0	0	3	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0007	3096	8	1	2	0	0	5	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0008	3096	6	6	0	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0009	3096	6	6	0	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0010	3096	4	4	0	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0011	3096	3	0	0	0	0	3	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0012	3096	3	3	0	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0013	3096	2	0	0	2	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0014	3096	2	1	1	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0015	3096	1	1	0	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0016	3096	1	0	0	0	0	1	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0017	3096	1	0	0	0	0	1	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0018	3096	1	0	0	1	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0019	3096	1	0	0	1	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0020	3096	1	0	0	0	1	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0021	3096	1	0	0	0	0	1	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0022	3096	1	0	1	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0023	3096	1	0	0	1	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0024	3096	1	0	0	1	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0025	3096	1	0	0	1	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0026	3096	1	0	0	0	0	1	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0027	3096	1	1	0	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	c0028	3096	1	1	0	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFB_chr16_14066319_14271773	1/1	c0001	3300	150	67	15	51	5	10	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	c0002	3300	67	6	6	49	1	5	copy fasta	MRTFB	chr16	14066319	14271773