JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRTFB_chr16_14066319_14271773	0/0	c0003	3300	11	11	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	c0004	3300	1	0	0	1	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	c0005	3300	1	0	0	1	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	c0006	3300	1	0	0	0	0	1	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	c0007	3300	1	0	0	1	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	c0008	3300	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	c0009	3300	1	0	1	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	c0010	3300	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	c0011	3300	1	0	0	1	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	c0012	3300	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	c0013	3300	1	0	0	0	0	1	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	c0014	3300	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	c0015	3300	1	0	0	0	0	1	copy fasta	MRTFB	chr16	14066319	14271773
MRTO4_chr1_19246805_19265128	1/0	c0001	720	253	42	49	124	11	26	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/1	c0002	720	50	4	8	27	0	10	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	c0003	720	49	37	9	0	2	1	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	c0004	720	40	11	12	5	3	9	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	c0005	720	2	0	2	0	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	c0006	720	1	0	0	1	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	c0007	720	1	1	0	0	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	c0008	720	1	0	0	1	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	c0009	720	1	1	0	0	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MS4A10_chr11_60780333_60806305	1/1	c0001	804	409	89	74	189	16	39	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	c0002	804	14	6	5	0	1	2	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	c0003	804	3	0	1	0	1	1	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	c0004	804	2	2	0	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	c0005	804	1	1	0	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	c0006	804	1	0	1	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	c0007	804	1	0	1	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	c0008	804	1	0	0	1	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A12_chr11_60487778_60512430	1/0	c0001	804	178	42	26	80	5	24	copy fasta	MS4A12	chr11	60487778	60512430
MS4A12_chr11_60487778_60512430	0/1	c0002	804	171	38	36	69	10	17	copy fasta	MS4A12	chr11	60487778	60512430
MS4A12_chr11_60487778_60512430	0/0	c0003	804	73	7	14	47	1	4	copy fasta	MS4A12	chr11	60487778	60512430
MS4A12_chr11_60487778_60512430	0/0	c0004	804	7	7	0	0	0	0	copy fasta	MS4A12	chr11	60487778	60512430
MS4A12_chr11_60487778_60512430	0/0	c0005	804	1	0	0	1	0	0	copy fasta	MS4A12	chr11	60487778	60512430
MS4A12_chr11_60487778_60512430	0/0	c0006	804	1	0	0	1	0	0	copy fasta	MS4A12	chr11	60487778	60512430
MS4A12_chr11_60487778_60512430	0/0	c0007	804	1	0	0	0	0	1	copy fasta	MS4A12	chr11	60487778	60512430
MS4A13_chr11_60510392_60547721	0/0	c0001	459	300	56	48	148	13	35	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	c0002	459	57	13	19	21	2	2	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/1	c0003	459	41	1	5	29	0	5	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	1/0	c0004	459	18	16	1	0	0	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	c0005	459	2	0	0	2	0	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	c0006	459	1	0	1	0	0	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	c0007	459	1	0	0	1	0	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	c0008	459	1	0	0	1	0	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	c0009	459	1	0	0	0	1	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A14_chr11_60391459_60422756	0/0	c0001	2038	193	33	44	90	6	20	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	1/0	c0002	2040	118	29	21	53	3	11	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0003	2038	38	5	0	29	0	4	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0004	2040	24	3	4	13	0	4	copy fasta	MS4A14	chr11	60391459	60422756