JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MS4A14_chr11_60391459_60422756	0/0	c0005	2038	14	0	2	7	1	4	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0006	2040	10	9	0	0	0	1	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0007	2040	8	0	0	7	0	1	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/1	c0008	2038	3	0	1	0	1	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0009	2038	2	0	0	2	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0010	2040	2	2	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0011	2040	2	2	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0012	2038	1	0	0	1	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0013	2038	1	0	0	1	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0014	2040	1	0	0	1	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0015	2040	1	0	0	0	0	1	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0016	2040	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0017	2040	1	0	0	0	1	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0018	2040	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0019	2040	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0020	2040	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0021	2040	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0022	2040	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0023	2040	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0024	2040	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	c0025	2040	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A15_chr11_60751867_60781733	0/0	c0001	723	194	4	24	137	11	18	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	1/0	c0002	723	150	69	21	37	3	19	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/1	c0003	723	95	24	32	29	4	5	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	c0004	723	3	0	0	2	0	1	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	c0005	723	3	0	0	0	0	3	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	c0006	723	1	1	0	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	c0007	723	1	0	1	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	c0008	723	1	1	0	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	c0009	723	1	1	0	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	c0010	723	1	0	0	1	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A18_chr11_60719720_60750028	1/0	c0001	1197	369	69	69	179	16	35	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	c0002	1197	11	11	0	0	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	c0003	1197	6	0	0	6	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	c0004	1197	6	6	0	0	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	c0005	1197	5	0	0	5	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	c0006	1197	5	5	0	0	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/1	c0007	1197	5	0	1	0	2	1	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	c0008	1197	2	0	0	2	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	c0009	1197	2	0	0	2	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	c0010	1197	1	0	0	1	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	c0011	1197	1	0	0	1	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	c0012	1197	1	0	0	1	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	c0013	1197	1	0	0	1	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	c0014	1197	1	1	0	0	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A1_chr11_60450847_60475752	1/1	c0001	894	400	94	69	182	17	36	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	c0002	894	43	0	1	37	1	4	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	c0003	894	1	0	0	0	0	1	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	c0004	894	1	0	0	0	0	1	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	c0005	894	1	0	0	1	0	0	copy fasta	MS4A1	chr11	60450847	60475752