JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MS4A2_chr11_60083664_60103467	1/1	c0001	735	345	67	67	148	16	45	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	c0002	735	58	16	2	40	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	c0003	735	4	4	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	c0004	735	4	4	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	c0005	735	4	4	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	c0006	735	1	0	1	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	c0007	735	1	0	0	0	0	1	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	c0008	735	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A3_chr11_60051665_60076115	1/1	c0001	645	302	62	58	150	6	24	copy fasta	MS4A3	chr11	60051665	60076115
MS4A3_chr11_60051665_60076115	0/0	c0002	645	104	29	14	36	10	15	copy fasta	MS4A3	chr11	60051665	60076115
MS4A3_chr11_60051665_60076115	0/0	c0003	645	1	0	0	0	0	1	copy fasta	MS4A3	chr11	60051665	60076115
MS4A3_chr11_60051665_60076115	0/0	c0004	645	1	1	0	0	0	0	copy fasta	MS4A3	chr11	60051665	60076115
MS4A4A_chr11_60275666_60313970	0/1	c0001	720	238	48	54	102	6	27	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	c0002	720	83	14	9	51	3	6	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	c0003	720	56	20	6	19	3	8	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	1/0	c0004	720	48	12	1	33	0	1	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	c0005	720	3	0	0	3	0	0	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	c0006	720	2	2	0	0	0	0	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4E_chr11_60195270_60248137	0/1	c0001	996	155	43	31	69	1	10	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0002	996	112	10	26	53	7	16	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0003	996	51	7	4	29	4	7	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0004	996	35	0	0	34	0	1	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	1/0	c0005	996	19	13	3	0	2	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0006	996	6	6	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0007	996	6	5	1	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0008	996	4	0	2	0	0	2	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0009	997	3	0	1	1	0	1	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0010	996	3	0	0	3	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0011	996	2	2	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0012	996	2	0	0	2	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0013	996	2	0	2	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0014	997	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0015	996	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0016	997	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0017	997	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0018	996	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0019	997	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0020	996	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0021	996	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0022	996	1	0	0	0	0	1	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	c0023	996	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A5_chr11_60424572_60452792	1/0	c0001	603	291	35	49	158	13	35	copy fasta	MS4A5	chr11	60424572	60452792
MS4A5_chr11_60424572_60452792	0/1	c0002	603	143	42	21	65	5	9	copy fasta	MS4A5	chr11	60424572	60452792
MS4A5_chr11_60424572_60452792	0/0	c0003	603	11	11	0	0	0	0	copy fasta	MS4A5	chr11	60424572	60452792
MS4A5_chr11_60424572_60452792	0/0	c0004	603	5	0	3	0	0	2	copy fasta	MS4A5	chr11	60424572	60452792
MS4A5_chr11_60424572_60452792	0/0	c0005	603	4	4	0	0	0	0	copy fasta	MS4A5	chr11	60424572	60452792
MS4A5_chr11_60424572_60452792	0/0	c0006	603	3	2	1	0	0	0	copy fasta	MS4A5	chr11	60424572	60452792
MS4A5_chr11_60424572_60452792	0/0	c0007	603	2	2	0	0	0	0	copy fasta	MS4A5	chr11	60424572	60452792
MS4A5_chr11_60424572_60452792	0/0	c0008	603	1	0	0	1	0	0	copy fasta	MS4A5	chr11	60424572	60452792
MS4A5_chr11_60424572_60452792	0/0	c0009	603	1	1	0	0	0	0	copy fasta	MS4A5	chr11	60424572	60452792