JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MS4A5_chr11_60424572_60452792	0/0	c0010	603	1	1	0	0	0	0	copy fasta	MS4A5	chr11	60424572	60452792
MS4A6A_chr11_60167497_60188083	1/1	c0001	678	246	71	30	121	3	19	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	0/0	c0002	678	68	4	21	16	6	21	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	0/0	c0003	678	46	12	7	24	2	1	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	0/0	c0004	678	2	0	1	1	0	0	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	0/0	c0005	678	1	0	0	0	0	1	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	0/0	c0006	678	1	0	0	0	1	0	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	0/0	c0007	678	1	0	1	0	0	0	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	0/0	c0008	678	1	1	0	0	0	0	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6E_chr11_60322255_60346341	1/0	c0001	444	288	69	40	128	15	35	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/1	c0002	444	119	18	34	54	2	10	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	c0003	444	29	9	2	18	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	c0004	444	5	0	0	5	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	c0005	444	3	0	0	3	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	c0006	444	2	2	0	0	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	c0007	444	1	0	0	1	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	c0008	444	1	0	0	0	1	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	c0009	444	1	0	0	0	0	1	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	c0010	444	1	0	0	1	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A7_chr11_60373532_60400948	0/1	c0001	723	163	36	22	85	4	15	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	1/0	c0002	723	147	22	24	80	5	15	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	c0003	723	75	4	19	35	5	12	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	c0004	723	15	15	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	c0005	723	8	8	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	c0006	723	3	3	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	c0007	723	1	1	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	c0008	723	1	1	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	c0009	723	1	0	1	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A8_chr11_60694612_60720807	1/1	c0001	753	378	68	67	186	14	41	copy fasta	MS4A8	chr11	60694612	60720807
MS4A8_chr11_60694612_60720807	0/0	c0002	753	19	18	1	0	0	0	copy fasta	MS4A8	chr11	60694612	60720807
MS4A8_chr11_60694612_60720807	0/0	c0003	753	2	0	0	1	0	1	copy fasta	MS4A8	chr11	60694612	60720807
MS4A8_chr11_60694612_60720807	0/0	c0004	753	2	2	0	0	0	0	copy fasta	MS4A8	chr11	60694612	60720807
MS4A8_chr11_60694612_60720807	0/0	c0005	753	1	0	0	1	0	0	copy fasta	MS4A8	chr11	60694612	60720807
MSANTD1_chr4_3244159_3261613	1/1	c0001	837	302	87	58	119	11	25	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	c0002	837	119	7	24	66	7	15	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	c0003	837	2	0	0	2	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	c0004	837	2	2	0	0	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	c0005	837	1	0	0	1	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	c0006	837	1	0	0	0	0	1	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	c0007	837	1	0	0	1	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	c0008	837	1	0	0	1	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	c0009	837	1	0	0	1	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	c0010	837	1	0	0	1	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	c0011	837	1	0	0	1	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	c0012	837	1	0	0	1	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	c0013	837	1	0	0	0	0	1	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD2_chr11_124761498_124805406	1/1	c0001	1680	312	86	50	129	10	35	copy fasta	MSANTD2	chr11	124761498	124805406
MSANTD2_chr11_124761498_124805406	0/0	c0002	1680	6	0	2	0	2	2	copy fasta	MSANTD2	chr11	124761498	124805406
MSANTD2_chr11_124761498_124805406	0/0	c0003	1680	2	2	0	0	0	0	copy fasta	MSANTD2	chr11	124761498	124805406
MSANTD2_chr11_124761498_124805406	0/0	c0004	1680	1	0	0	1	0	0	copy fasta	MSANTD2	chr11	124761498	124805406