JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MSH2_chr2_47398156_47488223	0/0	c0006	2805	3	0	1	0	0	2	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0007	2805	3	3	0	0	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0008	2805	2	0	0	0	0	2	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0009	2805	2	0	0	0	0	2	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0010	2805	2	0	0	2	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0011	2805	1	0	0	1	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0012	2805	1	0	0	1	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0013	2805	1	0	0	1	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0014	2805	1	1	0	0	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0015	2805	1	0	0	1	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0016	2805	1	0	0	1	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0017	2805	1	0	0	1	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0018	2805	1	0	0	1	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0019	2805	1	1	0	0	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH3_chr5_80649652_80881815	0/0	c0001	3414	95	22	22	38	4	9	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0002	3414	78	4	13	54	0	7	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0003	3387	39	17	5	6	4	7	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/1	c0004	3423	36	4	8	18	1	4	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0005	3414	22	2	2	7	2	9	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0006	3387	13	3	7	0	1	2	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0007	3423	9	0	0	8	0	1	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0008	3414	7	5	0	2	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0009	3396	5	0	0	5	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0010	3387	5	2	1	1	1	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0011	3432	3	3	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	1/0	c0012	3414	3	0	2	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0013	3414	3	3	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0014	3405	3	3	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0015	3441	2	1	1	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0016	3441	2	2	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0017	3405	2	0	0	2	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0018	3405	2	0	0	0	1	1	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0019	3414	2	0	1	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0020	3414	2	0	0	2	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0021	3432	2	0	0	2	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0022	3432	2	0	1	0	0	1	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0023	3423	2	0	2	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0024	3387	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0025	3414	1	0	1	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0026	3441	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0027	3432	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0028	3414	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0029	3405	1	0	0	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0030	3414	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0031	3441	1	0	1	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0032	3432	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0033	3414	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0034	3414	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0035	3414	1	0	0	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0036	3414	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815