JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MSH3_chr5_80649652_80881815	0/0	c0037	3414	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0038	3414	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0039	3414	1	0	0	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0040	3414	1	0	0	0	0	1	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0041	3432	1	0	1	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0042	3423	1	0	0	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0043	3423	1	0	0	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0044	3423	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0045	3432	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	c0046	3414	1	0	0	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH4_chr1_75791882_75918242	0/0	c0001	2811	84	1	15	54	5	9	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/1	c0002	2811	80	18	12	47	0	2	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	c0003	2811	71	27	18	10	6	10	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	1/0	c0004	2811	60	27	19	0	2	11	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	c0005	2811	20	12	4	2	1	1	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	c0006	2811	5	0	4	0	0	1	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	c0007	2811	5	0	2	0	0	3	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	c0008	2811	2	2	0	0	0	0	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	c0009	2811	1	0	0	1	0	0	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	c0010	2811	1	1	0	0	0	0	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	c0011	2811	1	1	0	0	0	0	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	c0012	2811	1	0	0	0	0	1	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	c0013	2811	1	1	0	0	0	0	copy fasta	MSH4	chr1	75791882	75918242
MSH5_chr6_31735005_31767676	0/1	c0001	2505	202	27	40	95	14	25	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	c0002	2505	114	49	14	35	2	14	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	c0003	2505	54	2	16	33	0	3	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	c0004	2505	7	2	3	0	2	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	c0005	2505	5	5	0	0	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	c0006	2505	5	2	2	0	0	1	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	c0007	2505	3	3	0	0	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	c0008	2505	1	0	0	1	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	c0009	2505	1	1	0	0	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	c0010	2505	1	0	0	1	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	c0011	2505	1	1	0	0	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	c0012	2505	1	0	0	1	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	c0013	2505	1	0	1	0	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	c0014	2505	1	0	0	0	0	1	copy fasta	MSH5	chr6	31735005	31767676
MSH6_chr2_47778145_47811953	1/1	c0001	4083	234	41	48	108	6	29	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0002	4083	49	18	11	11	6	3	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0003	4083	40	1	1	37	0	1	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0004	4083	21	6	10	0	2	3	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0005	4083	10	10	0	0	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0006	4083	7	0	4	0	2	1	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0007	4083	5	3	2	0	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0008	4083	3	2	1	0	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0009	4083	2	0	0	2	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0010	4083	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0011	4083	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0012	4083	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0013	4083	1	0	0	0	0	1	copy fasta	MSH6	chr2	47778145	47811953