JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MSH6_chr2_47778145_47811953	0/0	c0014	4083	1	0	0	0	0	1	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0015	4083	1	1	0	0	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0016	4083	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0017	4083	1	0	0	0	0	1	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0018	4083	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0019	4083	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0020	4083	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0021	4083	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0022	4083	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0023	4083	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0024	4083	1	1	0	0	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0025	4083	1	1	0	0	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0026	4083	1	0	1	0	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0027	4083	1	1	0	0	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	c0028	4083	1	1	0	0	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSI1_chr12_120336330_120374164	1/1	c0001	1089	344	93	57	137	16	39	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	c0002	1089	1	1	0	0	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	c0003	1089	1	0	0	1	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	c0004	1089	1	0	1	0	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	c0005	1089	1	0	0	0	0	1	copy fasta	MSI1	chr12	120336330	120374164
MSI2_chr17_57251523_57689689	1/1	c0001	987	165	73	31	42	4	13	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	c0002	987	1	0	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	c0003	987	1	0	0	0	0	1	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	c0004	987	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSL1_chr17_40116971_40141917	1/1	c0001	1845	288	62	52	141	10	21	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	c0002	1845	24	22	2	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	c0003	1845	13	0	0	13	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	c0004	1845	13	0	9	0	3	1	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	c0005	1845	6	0	0	6	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	c0006	1845	5	0	0	5	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	c0007	1845	2	0	1	0	1	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	c0008	1845	1	0	0	1	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	c0009	1874	1	0	0	1	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	c0010	1845	1	1	0	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	c0011	1845	1	0	0	1	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	c0012	1845	1	1	0	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL2_chr3_136143917_136201335	1/1	c0001	1734	306	92	65	92	12	43	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	c0002	1734	3	0	1	0	2	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	c0003	1734	1	0	0	0	0	1	copy fasta	MSL2	chr3	136143917	136201335
MSL3_chrX_11753237_11780772	1/1	c0001	1566	274	66	47	120	13	26	copy fasta	MSL3	chrX	11753237	11780772
MSL3_chrX_11753237_11780772	0/0	c0002	1566	10	5	5	0	0	0	copy fasta	MSL3	chrX	11753237	11780772
MSL3_chrX_11753237_11780772	0/0	c0003	1566	7	7	0	0	0	0	copy fasta	MSL3	chrX	11753237	11780772
MSL3_chrX_11753237_11780772	0/0	c0004	1566	2	0	0	0	0	2	copy fasta	MSL3	chrX	11753237	11780772
MSL3_chrX_11753237_11780772	0/0	c0005	1566	1	1	0	0	0	0	copy fasta	MSL3	chrX	11753237	11780772
MSL3_chrX_11753237_11780772	0/0	c0006	1566	1	0	0	1	0	0	copy fasta	MSL3	chrX	11753237	11780772
MSL3_chrX_11753237_11780772	0/0	c0007	1567	1	0	1	0	0	0	copy fasta	MSL3	chrX	11753237	11780772
MSL3_chrX_11753237_11780772	0/0	c0008	1566	1	1	0	0	0	0	copy fasta	MSL3	chrX	11753237	11780772
MSLN_chr16_755734_773862	1/0	c0001	1869	148	21	28	77	7	14	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/1	c0002	1869	66	5	9	43	2	6	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0003	1869	26	12	10	2	0	2	copy fasta	MSLN	chr16	755734	773862