JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MSLN_chr16_755734_773862	0/0	c0004	1869	23	14	2	3	1	3	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0005	1869	16	2	3	4	0	7	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0006	1869	12	0	1	5	0	6	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0007	1869	8	6	2	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0008	1869	7	0	0	7	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0009	1869	7	7	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0010	1869	6	5	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0011	1870	5	0	3	2	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0012	1869	5	5	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0013	1869	4	3	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0014	1869	4	0	3	0	1	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0015	1869	4	4	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0016	1869	4	4	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0017	1869	3	0	0	2	0	1	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0018	1869	3	0	3	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0019	1869	3	3	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0020	1869	2	0	0	2	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0021	1869	2	0	0	2	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0022	1869	2	0	1	0	0	1	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0023	1869	2	0	1	0	0	1	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0024	1869	2	2	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0025	1869	1	0	0	0	0	1	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0026	1835	1	0	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0027	1870	1	1	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0028	1869	1	0	0	1	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0029	1869	1	1	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0030	1869	1	0	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0031	1870	1	0	0	0	0	1	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0032	1869	1	0	0	1	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0033	1869	1	0	0	1	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0034	1869	1	1	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0035	1869	1	0	0	0	0	1	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0036	1869	1	0	0	0	0	1	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0037	1869	1	0	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0038	1869	1	0	0	1	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0039	1868	1	0	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0040	1869	1	0	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0041	1869	1	0	0	1	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0042	1869	1	0	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0043	1869	1	1	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0044	1870	1	1	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0045	1869	1	0	0	0	0	1	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0046	1869	1	0	0	1	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0047	1869	1	0	0	1	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	c0048	1869	1	0	0	0	1	0	copy fasta	MSLN	chr16	755734	773862
MSMB_chr10_46028313_46051269	1/1	c0001	345	445	88	68	227	18	42	copy fasta	MSMB	chr10	46028313	46051269
MSMB_chr10_46028313_46051269	0/0	c0002	345	1	0	0	1	0	0	copy fasta	MSMB	chr10	46028313	46051269
MSMO1_chr4_165322669_165348164	1/1	c0001	882	444	93	80	210	14	45	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	c0002	882	6	0	3	0	2	1	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	c0003	882	5	5	0	0	0	0	copy fasta	MSMO1	chr4	165322669	165348164