JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MSMO1_chr4_165322669_165348164	0/0	c0004	882	4	0	0	4	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	c0005	882	1	1	0	0	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	c0006	882	1	1	0	0	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	c0007	882	1	0	1	0	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMP_chr9_35747990_35759276	1/1	c0001	420	381	83	68	173	14	41	copy fasta	MSMP	chr9	35747990	35759276
MSMP_chr9_35747990_35759276	0/0	c0002	420	36	0	0	35	0	1	copy fasta	MSMP	chr9	35747990	35759276
MSMP_chr9_35747990_35759276	0/0	c0003	420	4	4	0	0	0	0	copy fasta	MSMP	chr9	35747990	35759276
MSMP_chr9_35747990_35759276	0/0	c0004	420	2	2	0	0	0	0	copy fasta	MSMP	chr9	35747990	35759276
MSMP_chr9_35747990_35759276	0/0	c0005	420	1	1	0	0	0	0	copy fasta	MSMP	chr9	35747990	35759276
MSN_chrX_65662654_65746931	1/1	c0001	1734	169	52	26	66	7	16	copy fasta	MSN	chrX	65662654	65746931
MSN_chrX_65662654_65746931	0/0	c0002	1734	1	0	0	1	0	0	copy fasta	MSN	chrX	65662654	65746931
MSR1_chr8_16102881_16197651	0/1	c0001	1356	211	65	43	65	12	25	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0002	1356	68	3	7	47	2	9	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0003	1356	10	0	1	9	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0004	1356	8	6	2	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0005	1356	7	6	1	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0006	1356	5	4	1	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0007	1356	3	0	0	3	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0008	1356	2	0	2	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0009	1356	2	0	2	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0010	1356	2	0	2	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0011	1356	2	2	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0012	1356	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0013	1356	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0014	1356	1	0	1	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0015	1356	1	0	0	1	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	1/0	c0016	1356	1	0	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0017	1356	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0018	1356	1	0	0	1	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0019	1356	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0020	1356	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	c0021	1356	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSRA_chr8_10049292_10433891	1/1	c0001	708	205	59	45	62	9	28	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	c0002	708	77	21	9	38	1	8	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	c0003	708	2	0	0	0	0	2	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	c0004	708	2	0	0	2	0	0	copy fasta	MSRA	chr8	10049292	10433891
MSRB1_chr16_1933229_1948199	1/1	c0001	351	444	97	83	200	16	46	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	c0002	351	1	0	1	0	0	0	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	c0003	351	1	0	0	0	0	1	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	c0004	351	1	1	0	0	0	0	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	c0005	351	1	0	0	0	0	1	copy fasta	MSRB1	chr16	1933229	1948199
MSRB2_chr10_23090579_23127013	1/1	c0001	549	326	69	60	152	12	31	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	c0002	549	77	22	12	29	5	9	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	c0003	549	29	0	3	24	0	2	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	c0004	549	5	0	0	5	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	c0005	549	1	0	1	0	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	c0006	549	1	1	0	0	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	c0007	549	1	0	0	0	1	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	c0008	549	1	1	0	0	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	c0009	549	1	1	0	0	0	0	copy fasta	MSRB2	chr10	23090579	23127013