JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MSRB3_chr12_65273683_65471907	1/1	c0001	558	299	80	55	116	12	34	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	c0002	558	8	8	0	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	c0003	558	2	0	2	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	c0004	558	2	2	0	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	c0005	558	1	0	1	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSS51_chr10_73418579_73438561	1/1	c0001	1383	272	69	40	125	6	30	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	c0002	1383	13	11	2	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	c0003	1383	13	0	0	13	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	c0004	1383	9	1	0	8	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	c0005	1383	2	0	2	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	c0006	1383	1	1	0	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	c0007	1383	1	1	0	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	c0008	1383	1	1	0	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	c0009	1383	1	1	0	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	c0010	1383	1	0	0	0	0	1	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	c0011	1383	1	1	0	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	c0012	1383	1	0	0	0	0	1	copy fasta	MSS51	chr10	73418579	73438561
MST1R_chr3_49882002_49908873	1/0	c0001	4203	133	22	27	51	7	25	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/1	c0002	4203	114	52	27	24	4	6	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0003	4203	11	11	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0004	4203	8	0	0	8	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0005	4203	6	0	6	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0006	4203	4	1	2	0	1	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0007	4203	3	0	0	0	0	3	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0008	4203	2	0	0	0	0	2	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0009	4203	2	2	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0010	4203	1	1	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0011	4203	1	0	0	0	0	1	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0012	4203	1	0	1	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0013	4203	1	0	0	1	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0014	4203	1	0	0	1	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0015	4203	1	0	1	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0016	4203	1	1	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0017	4203	1	0	0	1	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0018	4203	1	1	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0019	4203	1	0	0	0	0	1	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0020	4203	1	1	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0021	4203	1	1	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0022	4203	1	1	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0023	4203	1	1	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	c0024	4203	1	1	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1_chr3_49678947_49694474	0/1	c0001	2178	167	32	36	69	6	23	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0002	2178	62	18	14	15	7	8	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	1/0	c0003	2178	37	23	8	1	3	1	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0004	2178	14	13	0	0	0	1	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0005	2178	11	0	8	3	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0006	2178	9	0	0	8	0	1	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0007	2178	4	2	0	0	1	1	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0008	2178	3	3	0	0	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0009	2178	2	2	0	0	0	0	copy fasta	MST1	chr3	49678947	49694474