JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MST1_chr3_49678947_49694474	0/0	c0010	2178	2	0	0	2	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0011	2178	1	1	0	0	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0012	2178	1	0	0	1	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0013	2178	1	0	0	1	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0014	2178	1	1	0	0	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0015	2178	1	0	0	1	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0016	2178	1	1	0	0	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0017	2178	1	0	0	0	0	1	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0018	2178	1	0	0	0	1	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	c0019	2178	1	0	0	1	0	0	copy fasta	MST1	chr3	49678947	49694474
MSTN_chr2_190050700_190067729	1/1	c0001	1128	327	49	68	158	12	38	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	c0002	1128	26	24	2	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	c0003	1128	18	18	0	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	c0004	1128	4	4	0	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	c0005	1128	3	0	0	3	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	c0006	1128	3	0	0	3	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	c0007	1128	1	1	0	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	c0008	1128	1	1	0	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	c0009	1128	1	1	0	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTO1_chr1_155605218_155619951	1/1	c0001	1713	213	69	47	50	12	33	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	c0002	1713	158	11	16	112	6	13	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	c0003	1713	7	0	0	7	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	c0004	1713	7	7	0	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	c0005	1713	4	4	0	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	c0006	1713	3	2	1	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	c0007	1713	2	2	0	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	c0008	1713	1	0	0	1	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	c0009	1713	1	0	1	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	c0010	1713	1	0	1	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	c0011	1713	1	1	0	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSX1_chr4_4854665_4868936	1/0	c0001	912	337	82	61	151	14	28	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	c0002	912	38	2	13	14	2	7	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/1	c0003	912	37	6	8	13	0	9	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	c0004	912	16	0	0	16	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	c0005	912	3	0	0	3	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	c0006	912	2	2	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	c0007	912	2	0	2	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	c0008	912	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	c0009	912	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	c0010	912	1	0	0	0	0	1	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	c0011	912	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	c0012	912	1	0	0	0	0	1	copy fasta	MSX1	chr4	4854665	4868936
MSX2_chr5_174719582_174735896	0/1	c0001	804	270	34	54	135	11	35	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	1/0	c0002	804	82	63	8	6	1	3	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	c0003	804	2	0	2	0	0	0	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	c0004	804	1	0	0	1	0	0	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	c0005	804	1	1	0	0	0	0	copy fasta	MSX2	chr5	174719582	174735896
MT1A_chr16_56633666_56645087	0/1	c0001	186	232	22	51	120	10	28	copy fasta	MT1A	chr16	56633666	56645087
MT1A_chr16_56633666_56645087	1/0	c0002	186	144	68	20	38	6	11	copy fasta	MT1A	chr16	56633666	56645087
MT1A_chr16_56633666_56645087	0/0	c0003	186	72	8	9	44	2	9	copy fasta	MT1A	chr16	56633666	56645087