JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MT1B_chr16_56646886_56658204	1/1	c0001	186	442	87	76	218	13	46	copy fasta	MT1B	chr16	56646886	56658204
MT1B_chr16_56646886_56658204	0/0	c0002	186	9	9	0	0	0	0	copy fasta	MT1B	chr16	56646886	56658204
MT1B_chr16_56646886_56658204	0/0	c0003	186	4	0	2	0	2	0	copy fasta	MT1B	chr16	56646886	56658204
MT1B_chr16_56646886_56658204	0/0	c0004	186	1	0	0	0	1	0	copy fasta	MT1B	chr16	56646886	56658204
MT1E_chr16_56620781_56632112	1/1	c0001	384	430	96	77	196	15	44	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	c0002	384	13	1	7	0	3	2	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	c0003	384	11	0	0	11	0	0	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	c0004	384	2	0	0	0	0	2	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	c0005	384	1	0	0	1	0	0	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	c0006	384	1	1	0	0	0	0	copy fasta	MT1E	chr16	56620781	56632112
MT1F_chr16_56652959_56664303	1/1	c0001	186	447	88	80	215	16	46	copy fasta	MT1F	chr16	56652959	56664303
MT1F_chr16_56652959_56664303	0/0	c0002	186	7	7	0	0	0	0	copy fasta	MT1F	chr16	56652959	56664303
MT1F_chr16_56652959_56664303	0/0	c0003	186	5	0	0	5	0	0	copy fasta	MT1F	chr16	56652959	56664303
MT1F_chr16_56652959_56664303	0/0	c0004	186	2	2	0	0	0	0	copy fasta	MT1F	chr16	56652959	56664303
MT1F_chr16_56652959_56664303	0/0	c0005	186	1	1	0	0	0	0	copy fasta	MT1F	chr16	56652959	56664303
MT1G_chr16_56661730_56673065	1/1	c0001	189	464	98	84	216	16	48	copy fasta	MT1G	chr16	56661730	56673065
MT1G_chr16_56661730_56673065	0/0	c0002	189	4	0	0	4	0	0	copy fasta	MT1G	chr16	56661730	56673065
MT1G_chr16_56661730_56673065	0/0	c0003	189	1	0	0	1	0	0	copy fasta	MT1G	chr16	56661730	56673065
MT1G_chr16_56661730_56673065	0/0	c0004	189	1	0	0	1	0	0	copy fasta	MT1G	chr16	56661730	56673065
MT1HL1_chr1_236999103_237009441	1/1	c0001	186	465	97	84	220	16	46	copy fasta	MT1HL1	chr1	236999103	237009441
MT1HL1_chr1_236999103_237009441	0/0	c0002	186	2	2	0	0	0	0	copy fasta	MT1HL1	chr1	236999103	237009441
MT1HL1_chr1_236999103_237009441	0/0	c0003	186	1	1	0	0	0	0	copy fasta	MT1HL1	chr1	236999103	237009441
MT1H_chr16_56664814_56676129	1/1	c0001	186	433	78	82	209	16	46	copy fasta	MT1H	chr16	56664814	56676129
MT1H_chr16_56664814_56676129	0/0	c0002	186	14	14	0	0	0	0	copy fasta	MT1H	chr16	56664814	56676129
MT1H_chr16_56664814_56676129	0/0	c0003	186	1	1	0	0	0	0	copy fasta	MT1H	chr16	56664814	56676129
MT1H_chr16_56664814_56676129	0/0	c0004	186	1	0	0	1	0	0	copy fasta	MT1H	chr16	56664814	56676129
MT1H_chr16_56664814_56676129	0/0	c0005	186	1	1	0	0	0	0	copy fasta	MT1H	chr16	56664814	56676129
MT1M_chr16_56627659_56638981	0/1	c0001	186	316	53	71	140	14	37	copy fasta	MT1M	chr16	56627659	56638981
MT1M_chr16_56627659_56638981	1/0	c0002	186	124	38	11	61	4	9	copy fasta	MT1M	chr16	56627659	56638981
MT1M_chr16_56627659_56638981	0/0	c0003	186	3	3	0	0	0	0	copy fasta	MT1M	chr16	56627659	56638981
MT1M_chr16_56627659_56638981	0/0	c0004	186	1	1	0	0	0	0	copy fasta	MT1M	chr16	56627659	56638981
MT1M_chr16_56627659_56638981	0/0	c0005	186	1	0	0	1	0	0	copy fasta	MT1M	chr16	56627659	56638981
MT1M_chr16_56627659_56638981	0/0	c0006	186	1	1	0	0	0	0	copy fasta	MT1M	chr16	56627659	56638981
MT1X_chr16_56677470_56689196	0/1	c0001	186	443	80	80	222	16	44	copy fasta	MT1X	chr16	56677470	56689196
MT1X_chr16_56677470_56689196	0/0	c0002	186	6	6	0	0	0	0	copy fasta	MT1X	chr16	56677470	56689196
MT2A_chr16_56603584_56614497	0/0	c0001	186	454	94	76	218	16	50	copy fasta	MT2A	chr16	56603584	56614497
MT2A_chr16_56603584_56614497	0/0	c0002	186	4	0	0	4	0	0	copy fasta	MT2A	chr16	56603584	56614497
MT3_chr16_56584528_56596085	1/1	c0001	207	438	84	78	222	14	38	copy fasta	MT3	chr16	56584528	56596085
MT4_chr16_56560073_56573957	0/1	c0001	189	337	63	67	152	17	37	copy fasta	MT4	chr16	56560073	56573957
MT4_chr16_56560073_56573957	1/0	c0002	189	82	24	3	50	0	4	copy fasta	MT4	chr16	56560073	56573957
MT4_chr16_56560073_56573957	0/0	c0003	189	8	2	4	0	1	1	copy fasta	MT4	chr16	56560073	56573957
MT4_chr16_56560073_56573957	0/0	c0004	189	1	1	0	0	0	0	copy fasta	MT4	chr16	56560073	56573957
MTA1_chr14_105414827_105475729	0/1	c0001	2148	150	40	40	43	9	17	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0002	2148	77	1	14	49	2	11	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0003	2149	14	3	4	3	0	4	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0004	2148	12	10	2	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0005	2149	10	0	3	4	0	3	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0006	2148	9	9	0	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0007	2148	9	8	1	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	1/0	c0008	2148	5	4	0	0	0	0	copy fasta	MTA1	chr14	105414827	105475729