JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTARC2_chr1_220743322_220789815	0/0	c0005	1008	11	10	0	0	0	1	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0006	1008	8	3	2	3	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0007	1008	5	0	0	4	0	1	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0008	1008	2	2	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0009	1008	2	2	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0010	1008	2	2	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0011	1008	1	1	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0012	1008	1	0	0	0	0	1	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0013	1008	1	1	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0014	1008	1	1	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0015	1008	1	0	0	1	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0016	1008	1	0	0	1	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0017	1008	1	1	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0018	1008	1	0	1	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0019	1008	1	1	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0020	1008	1	0	0	1	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTBP_chr8_120440419_120528636	1/0	c0001	2715	144	50	30	49	1	13	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/1	c0002	2715	121	10	24	63	7	16	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0003	2715	44	1	2	34	1	6	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0004	2715	8	4	2	0	1	1	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0005	2715	8	6	2	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0006	2715	4	4	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0007	2715	4	4	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0008	2715	2	0	0	2	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0009	2715	2	2	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0010	2715	2	2	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0011	2715	2	0	2	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0012	2715	1	0	0	0	0	1	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0013	2715	1	1	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0014	2715	1	0	0	1	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0015	2715	1	1	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0016	2715	1	0	0	0	0	1	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0017	2715	1	1	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0018	2715	1	1	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0019	2715	1	0	0	1	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0020	2715	1	1	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0021	2715	1	1	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	c0022	2715	1	1	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTCH1_chr6_36963141_36991196	1/1	c0001	1170	329	77	68	140	10	32	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	c0002	1170	30	14	3	5	3	5	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	c0003	1170	29	0	0	27	0	2	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	c0004	1169	14	1	0	13	0	0	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	c0005	1170	3	3	0	0	0	0	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	c0006	1170	2	0	0	2	0	0	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	c0007	1170	2	0	1	0	1	0	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	c0008	1169	2	0	0	0	0	2	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	c0009	1170	1	0	0	1	0	0	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	c0010	1170	1	1	0	0	0	0	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	c0011	1170	1	0	0	0	0	1	copy fasta	MTCH1	chr6	36963141	36991196
MTCH2_chr11_47612317_47647559	1/1	c0001	912	279	84	43	114	10	26	copy fasta	MTCH2	chr11	47612317	47647559