JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTCH2_chr11_47612317_47647559	0/0	c0002	912	88	5	21	46	2	14	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	c0003	912	1	1	0	0	0	0	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	c0004	912	1	0	0	0	0	1	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	c0005	912	1	0	0	0	0	1	copy fasta	MTCH2	chr11	47612317	47647559
MTCL1_chr18_8700556_8837778	0/0	c0001	6036	20	3	1	15	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0002	6036	17	2	5	6	1	3	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0003	6036	14	2	4	4	2	2	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0004	6036	10	0	2	7	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/1	c0005	6036	9	0	4	4	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0006	6036	7	0	0	5	0	2	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0007	6036	7	1	1	5	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0008	6036	6	0	1	4	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0009	6036	6	0	2	4	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0010	6036	6	2	0	4	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0011	6036	5	0	0	5	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0012	6036	4	0	0	4	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0013	6036	4	0	2	2	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0014	6036	4	0	1	1	1	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0015	6036	4	0	1	2	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0016	6036	4	0	1	3	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0017	6036	4	1	3	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0018	6036	3	0	2	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0019	6036	3	1	0	2	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0020	6036	3	0	0	2	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0021	6036	3	3	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0022	6036	3	1	1	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0023	6036	3	1	1	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0024	6036	3	0	3	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0025	6036	2	0	1	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0026	6036	2	0	1	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0027	6036	2	0	0	2	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0028	6036	2	0	1	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0029	6036	2	2	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0030	6036	2	0	0	1	1	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0031	6036	2	2	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0032	6036	2	0	0	2	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0033	6036	2	2	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0034	6036	2	0	1	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0035	6036	2	1	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0036	6036	2	2	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0037	6036	2	0	1	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0038	6036	2	2	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0039	6036	2	2	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0040	6036	2	2	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0041	6036	2	2	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0042	6036	2	2	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0043	6036	2	0	0	2	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0044	6036	2	0	0	2	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0045	6036	2	0	0	1	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0046	6036	2	0	0	1	0	1	copy fasta	MTCL1	chr18	8700556	8837778