JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTCL1_chr18_8700556_8837778	0/0	c0147	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0148	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0149	6036	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0150	6036	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0151	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0152	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0153	6036	1	0	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0154	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0155	6036	1	0	0	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0156	6036	1	0	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0157	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0158	6036	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0159	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0160	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0161	6036	1	0	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0162	6036	1	0	0	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0163	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0164	6036	1	0	0	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0165	6036	1	0	0	0	1	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0166	6036	1	0	0	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0167	6036	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0168	6036	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0169	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0170	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0171	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0172	6036	1	0	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0173	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0174	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0175	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0176	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0177	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0178	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	c0179	6036	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCP1_chrX_155059034_155076136	1/1	c0001	324	296	72	55	122	13	32	copy fasta	MTCP1	chrX	155059034	155076136
MTCP1_chrX_155059034_155076136	0/0	c0002	324	1	0	1	0	0	0	copy fasta	MTCP1	chrX	155059034	155076136
MTDH_chr8_97639184_97735260	1/1	c0001	1749	299	81	45	136	6	29	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	c0002	1749	49	1	10	31	0	7	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	c0003	1749	5	4	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	c0004	1749	5	0	3	0	0	2	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	c0005	1749	3	3	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	c0006	1749	2	0	0	1	0	1	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	c0007	1749	2	2	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	c0008	1749	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	c0009	1749	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	c0010	1749	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	c0011	1749	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	c0012	1749	1	0	0	0	0	1	copy fasta	MTDH	chr8	97639184	97735260
MTERF1_chr7_91865929_91885702	1/0	c0001	1200	231	63	41	102	7	17	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/1	c0002	1200	192	22	34	107	6	22	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	c0003	1200	4	4	0	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702