JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTERF1_chr7_91865929_91885702	0/0	c0004	1200	3	2	1	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	c0005	1200	3	0	0	0	1	2	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	c0006	1200	2	2	0	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	c0007	1200	2	0	0	2	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	c0008	1200	1	1	0	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	c0009	1200	1	0	0	1	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	c0010	1200	1	0	0	0	0	1	copy fasta	MTERF1	chr7	91865929	91885702
MTERF2_chr12_106972277_106992146	1/1	c0001	1158	400	65	75	211	13	34	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	c0002	1158	32	11	3	4	3	11	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	c0003	1158	9	7	1	0	0	1	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	c0004	1158	6	5	1	0	0	0	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	c0005	1158	5	5	0	0	0	0	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	c0006	1158	3	1	2	0	0	0	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	c0007	1158	1	0	0	1	0	0	copy fasta	MTERF2	chr12	106972277	106992146
MTERF3_chr8_96234402_96266610	1/1	c0001	1254	271	60	54	116	5	34	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	c0002	1254	14	13	1	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	c0003	1254	2	2	0	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	c0004	1254	2	2	0	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	c0005	1254	1	1	0	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	c0006	1254	1	0	0	0	1	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	c0007	1254	1	1	0	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	c0008	1254	1	1	0	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	c0009	1254	1	0	1	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF4_chr2_241090571_241107287	1/1	c0001	1146	271	52	44	126	10	37	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	c0002	1146	48	12	9	23	1	3	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	c0003	1146	46	0	7	36	1	2	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	c0004	1143	8	8	0	0	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	c0005	1146	7	7	0	0	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	c0006	1143	5	4	1	0	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	c0007	1137	5	5	0	0	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	c0008	1146	4	3	1	0	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	c0009	1146	1	0	0	1	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	c0010	1146	1	0	0	1	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	c0011	1143	1	1	0	0	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	c0012	1146	1	0	0	1	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTF1_chr1_37804574_37864592	1/1	c0001	2262	281	74	45	124	8	28	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	c0002	2262	83	2	19	45	6	11	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	c0003	2262	4	4	0	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	c0004	2262	3	0	0	3	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	c0005	2262	2	2	0	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	c0006	2262	1	0	1	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	c0007	2262	1	0	1	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	c0008	2262	1	0	0	0	0	1	copy fasta	MTF1	chr1	37804574	37864592
MTF2_chr1_93074283_93144076	1/1	c0001	1782	335	87	63	139	14	30	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	c0002	1782	3	0	0	3	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	c0003	1782	1	1	0	0	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	c0004	1782	1	0	1	0	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTFMT_chr15_64996512_65034639	1/1	c0001	1170	272	75	55	101	12	27	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0002	1170	22	14	0	4	2	2	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0003	1170	5	0	0	2	0	3	copy fasta	MTFMT	chr15	64996512	65034639