JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTFMT_chr15_64996512_65034639	0/0	c0004	1170	5	0	4	1	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0005	1170	4	4	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0006	1170	3	3	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0007	1170	2	0	2	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0008	1170	2	0	0	2	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0009	1170	2	2	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0010	1170	1	1	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0011	1170	1	0	1	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0012	1170	1	0	0	1	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0013	1170	1	0	0	1	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0014	1170	1	0	0	0	0	1	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0015	1170	1	0	0	0	0	1	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0016	1170	1	0	0	1	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0017	1170	1	0	0	1	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0018	1170	1	1	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0019	1170	1	0	1	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	c0020	1170	1	0	1	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFP1_chr22_30420768_30434054	0/1	c0001	501	253	38	45	130	7	32	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	1/0	c0002	501	182	56	35	64	10	16	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	c0003	501	4	0	3	0	1	0	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	c0004	501	1	1	0	0	0	0	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	c0005	501	1	0	1	0	0	0	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	c0006	501	1	1	0	0	0	0	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	c0007	501	1	0	0	1	0	0	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	c0008	501	1	0	0	1	0	0	copy fasta	MTFP1	chr22	30420768	30434054
MTFR1L_chr1_25814954_25837938	1/1	c0001	879	377	78	72	176	13	36	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	c0002	879	7	7	0	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	c0003	879	6	4	2	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	c0004	879	6	6	0	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	c0005	879	2	2	0	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	c0006	879	1	0	0	0	1	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	c0007	879	1	1	0	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	c0008	879	1	0	0	1	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	c0009	879	1	0	0	1	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1_chr8_65639734_65715562	1/1	c0001	1002	347	84	72	139	14	36	copy fasta	MTFR1	chr8	65639734	65715562
MTFR1_chr8_65639734_65715562	0/0	c0002	1002	1	0	0	1	0	0	copy fasta	MTFR1	chr8	65639734	65715562
MTFR2_chr6_136226034_136255311	1/1	c0001	1158	340	49	62	185	15	27	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0002	1158	24	23	1	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0003	1158	16	0	7	8	1	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0004	1158	9	8	1	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0005	1158	8	6	2	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0006	1158	3	0	0	3	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0007	1158	3	0	2	1	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0008	1158	3	3	0	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0009	1158	3	3	0	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0010	1283	1	0	0	1	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0011	1158	1	1	0	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0012	1158	1	1	0	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0013	1158	1	0	0	0	0	1	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0014	1158	1	0	1	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311