JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTFR2_chr6_136226034_136255311	0/0	c0015	1158	1	1	0	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0016	1158	1	0	0	1	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0017	1158	1	0	0	1	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	c0018	1158	1	1	0	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTG1_chr10_133389157_133427520	0/1	c0001	1005	417	92	78	192	17	37	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	c0002	1005	2	0	1	0	1	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	c0003	1005	1	0	0	1	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	1/0	c0004	1005	1	0	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	c0005	1005	1	0	0	1	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	c0006	1005	1	0	0	1	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	c0007	1005	1	0	0	1	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	c0008	1005	1	0	0	1	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	c0009	1005	1	0	0	1	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	c0010	1005	1	0	1	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	c0011	1005	1	0	0	0	0	1	copy fasta	MTG1	chr10	133389157	133427520
MTG2_chr20_62178028_62208568	1/0	c0001	1221	232	57	50	90	10	24	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/1	c0002	1221	117	17	12	73	2	12	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0003	1221	41	17	10	8	3	3	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0004	1221	5	0	5	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0005	1221	3	0	2	0	1	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0006	1221	2	0	0	0	0	2	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0007	1221	2	0	0	0	2	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0008	1221	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0009	1221	1	1	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0010	1221	1	1	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0011	1221	1	0	0	0	0	1	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0012	1221	1	1	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0013	1221	1	0	1	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0014	1221	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0015	1221	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0016	1221	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	c0017	1221	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTHFD1L_chr6_150860702_151106887	0/0	c0001	2937	122	63	23	26	2	8	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	1/1	c0002	2937	81	11	24	16	7	21	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	c0003	2937	4	4	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	c0004	2937	3	3	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	c0005	2937	3	3	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	c0006	2937	2	2	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	c0007	2937	2	2	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	c0008	2937	2	0	0	2	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	c0009	2937	1	1	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	c0010	2937	1	0	0	0	1	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	c0011	2937	1	0	0	0	0	1	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	c0012	2937	1	0	0	1	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	c0013	2937	1	0	0	1	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	c0014	2937	1	1	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	c0015	2937	1	0	1	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1_chr14_64383353_64465025	0/1	c0001	2808	168	43	24	76	5	19	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	c0002	2808	88	13	25	29	6	15	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	1/0	c0003	2808	54	5	3	42	1	2	copy fasta	MTHFD1	chr14	64383353	64465025