JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTHFD1_chr14_64383353_64465025	0/0	c0004	2808	11	10	1	0	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	c0005	2808	5	5	0	0	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	c0006	2808	5	5	0	0	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	c0007	2808	2	1	0	1	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	c0008	2808	2	0	0	0	0	2	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	c0009	2808	2	2	0	0	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	c0010	2808	1	0	0	1	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	c0011	2808	1	1	0	0	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	c0012	2808	1	1	0	0	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	c0013	2808	1	0	0	1	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	c0014	2808	1	0	1	0	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD2L_chr4_74153118_74308099	1/1	c0001	1044	196	72	32	70	2	18	copy fasta	MTHFD2L	chr4	74153118	74308099
MTHFD2L_chr4_74153118_74308099	0/0	c0002	1044	1	0	0	1	0	0	copy fasta	MTHFD2L	chr4	74153118	74308099
MTHFD2L_chr4_74153118_74308099	0/0	c0003	1044	1	1	0	0	0	0	copy fasta	MTHFD2L	chr4	74153118	74308099
MTHFD2L_chr4_74153118_74308099	0/0	c0004	1044	1	1	0	0	0	0	copy fasta	MTHFD2L	chr4	74153118	74308099
MTHFD2L_chr4_74153118_74308099	0/0	c0005	1044	1	0	0	1	0	0	copy fasta	MTHFD2L	chr4	74153118	74308099
MTHFD2_chr2_74193615_74222565	1/1	c0001	1053	412	93	74	196	10	37	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	c0002	1053	1	1	0	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	c0003	1053	1	0	0	0	0	1	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFR_chr1_11780723_11810964	0/0	c0001	1971	131	28	26	58	5	14	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0002	1971	94	6	29	49	2	8	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/1	c0003	1971	55	4	9	22	4	15	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	1/0	c0004	1971	32	30	1	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0005	1971	25	0	3	21	0	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0006	1971	6	5	0	0	0	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0007	1971	5	5	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0008	1971	4	1	0	1	1	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0009	1971	3	3	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0010	1971	2	2	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0011	1971	2	2	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0012	1971	2	0	0	0	0	2	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0013	1971	1	0	0	0	0	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0014	1971	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0015	1971	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0016	1971	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0017	1971	1	0	1	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0018	1971	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0019	1971	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0020	1971	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0021	1971	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0022	1971	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0023	1971	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0024	1971	1	0	0	0	0	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0025	1971	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0026	1971	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	c0027	1971	1	0	1	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFSD_chr16_86525186_86560235	0/0	c0001	1152	149	46	24	51	10	18	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	c0002	1152	105	28	21	48	2	6	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/1	c0003	1152	66	1	8	44	2	10	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	1/0	c0004	1152	58	8	12	29	2	6	copy fasta	MTHFSD	chr16	86525186	86560235