JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTHFSD_chr16_86525186_86560235	0/0	c0005	1152	5	5	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	c0006	1152	5	0	1	3	0	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	c0007	1152	5	1	3	0	0	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	c0008	1152	3	2	1	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	c0009	1152	2	0	0	2	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	c0010	1152	2	0	0	1	0	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	c0011	1152	2	2	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	c0012	1152	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	c0013	1152	1	1	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	c0014	1152	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	c0015	1152	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	c0016	1152	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	c0017	1152	1	0	0	0	0	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFS_chr15_79838547_79902014	1/1	c0001	612	368	84	58	166	13	45	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	c0002	612	17	6	4	4	3	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	c0003	612	4	3	1	0	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	c0004	612	1	0	0	1	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	c0005	612	1	0	0	1	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	c0006	612	1	0	1	0	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	c0007	612	1	0	0	0	0	1	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	c0008	612	1	1	0	0	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTIF2_chr2_55231595_55274231	0/0	c0001	2184	171	34	36	79	7	15	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	1/1	c0002	2184	132	41	14	57	4	14	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	c0003	2184	39	1	21	8	1	8	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	c0004	2184	18	0	5	10	2	1	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	c0005	2184	9	0	0	9	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	c0006	2185	4	2	1	1	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	c0007	2184	3	3	0	0	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	c0008	2185	2	0	0	2	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	c0009	2184	1	1	0	0	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	c0010	2184	1	0	1	0	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	c0011	2184	1	1	0	0	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	c0012	2184	1	0	0	1	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	c0013	2184	1	0	0	1	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	c0014	2184	1	1	0	0	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF3_chr13_27430643_27455564	0/1	c0001	837	263	81	47	92	7	35	copy fasta	MTIF3	chr13	27430643	27455564
MTIF3_chr13_27430643_27455564	1/0	c0002	837	97	12	17	59	3	5	copy fasta	MTIF3	chr13	27430643	27455564
MTIF3_chr13_27430643_27455564	0/0	c0003	837	49	6	7	29	2	5	copy fasta	MTIF3	chr13	27430643	27455564
MTIF3_chr13_27430643_27455564	0/0	c0004	837	2	1	1	0	0	0	copy fasta	MTIF3	chr13	27430643	27455564
MTIF3_chr13_27430643_27455564	0/0	c0005	837	1	0	0	0	0	1	copy fasta	MTIF3	chr13	27430643	27455564
MTIF3_chr13_27430643_27455564	0/0	c0006	837	1	0	0	1	0	0	copy fasta	MTIF3	chr13	27430643	27455564
MTIF3_chr13_27430643_27455564	0/0	c0007	837	1	0	0	1	0	0	copy fasta	MTIF3	chr13	27430643	27455564
MTLN_chr2_110206529_110217547	1/1	c0001	171	382	78	72	170	18	42	copy fasta	MTLN	chr2	110206529	110217547
MTLN_chr2_110206529_110217547	0/0	c0002	171	6	6	0	0	0	0	copy fasta	MTLN	chr2	110206529	110217547
MTLN_chr2_110206529_110217547	0/0	c0003	171	4	0	0	4	0	0	copy fasta	MTLN	chr2	110206529	110217547
MTLN_chr2_110206529_110217547	0/0	c0004	171	3	0	3	0	0	0	copy fasta	MTLN	chr2	110206529	110217547
MTLN_chr2_110206529_110217547	0/0	c0005	171	1	0	1	0	0	0	copy fasta	MTLN	chr2	110206529	110217547
MTM1_chrX_150563621_150678143	1/1	c0001	1812	274	69	49	113	9	32	copy fasta	MTM1	chrX	150563621	150678143
MTM1_chrX_150563621_150678143	0/0	c0002	1811	1	0	0	1	0	0	copy fasta	MTM1	chrX	150563621	150678143
MTM1_chrX_150563621_150678143	0/0	c0003	1812	1	0	0	1	0	0	copy fasta	MTM1	chrX	150563621	150678143