JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTM1_chrX_150563621_150678143	0/0	c0004	1811	1	1	0	0	0	0	copy fasta	MTM1	chrX	150563621	150678143
MTMR10_chr15_30933941_30996628	0/0	c0001	2334	115	44	32	21	6	12	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0002	2334	89	20	18	36	2	13	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/1	c0003	2334	50	18	10	11	4	6	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0004	2334	6	0	0	6	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0005	2334	3	3	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0006	2334	2	2	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0007	2334	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0008	2334	1	0	0	1	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0009	2334	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0010	2334	1	0	0	1	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0011	2334	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0012	2334	1	0	0	0	0	1	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0013	2334	1	0	0	0	0	1	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0014	2334	1	0	0	1	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0015	2334	1	0	0	1	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0016	2334	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0017	2334	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	c0018	2334	1	0	0	0	0	1	copy fasta	MTMR10	chr15	30933941	30996628
MTMR11_chr1_149923651_149941879	0/0	c0001	2130	154	50	18	75	3	8	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	1/0	c0002	2130	117	20	19	57	7	13	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/1	c0003	2130	76	2	15	39	6	13	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	c0004	2130	11	11	0	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	c0005	2130	8	0	8	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	c0006	2130	7	7	0	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	c0007	2130	2	2	0	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	c0008	2130	1	1	0	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	c0009	2130	1	0	0	0	0	1	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	c0010	2130	1	0	0	1	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	c0011	2130	1	0	0	1	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	c0012	2130	1	0	0	1	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	c0013	2130	1	1	0	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	c0014	2130	1	0	0	0	0	1	copy fasta	MTMR11	chr1	149923651	149941879
MTMR12_chr5_32222007_32317939	1/1	c0001	2244	329	77	47	147	14	42	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	c0002	2244	18	0	7	11	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	c0003	2244	7	7	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	c0004	2244	3	3	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	c0005	2244	2	0	1	0	0	1	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	c0006	2244	1	0	0	1	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	c0007	2244	1	0	0	1	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	c0008	2244	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	c0009	2244	1	0	1	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	c0010	2244	1	0	0	0	0	1	copy fasta	MTMR12	chr5	32222007	32317939
MTMR14_chr3_9644505_9707393	1/1	c0001	1953	257	83	68	60	12	32	copy fasta	MTMR14	chr3	9644505	9707393
MTMR14_chr3_9644505_9707393	0/0	c0002	1953	1	1	0	0	0	0	copy fasta	MTMR14	chr3	9644505	9707393
MTMR14_chr3_9644505_9707393	0/0	c0003	1953	1	1	0	0	0	0	copy fasta	MTMR14	chr3	9644505	9707393
MTMR14_chr3_9644505_9707393	0/0	c0004	1953	1	1	0	0	0	0	copy fasta	MTMR14	chr3	9644505	9707393
MTMR14_chr3_9644505_9707393	0/0	c0005	1953	1	1	0	0	0	0	copy fasta	MTMR14	chr3	9644505	9707393
MTMR14_chr3_9644505_9707393	0/0	c0006	1953	1	1	0	0	0	0	copy fasta	MTMR14	chr3	9644505	9707393
MTMR1_chrX_150688396_150770108	0/1	c0001	2022	225	44	40	107	6	27	copy fasta	MTMR1	chrX	150688396	150770108