JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTMR1_chrX_150688396_150770108	1/0	c0002	2022	36	25	3	0	3	4	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	c0003	2022	2	2	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	c0004	2025	1	1	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	c0005	2022	1	1	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	c0006	2023	1	0	0	1	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	c0007	2022	1	0	0	0	0	1	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	c0008	2024	1	0	0	1	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	c0009	2022	1	1	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	c0010	2013	1	0	1	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR2_chr11_95827880_95929107	1/0	c0001	1932	213	67	42	78	4	21	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/1	c0002	1932	89	8	13	57	4	6	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	c0003	1932	10	6	0	0	0	4	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	c0004	1932	6	6	0	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	c0005	1932	5	0	0	5	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	c0006	1932	3	3	0	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	c0007	1932	2	0	0	0	0	2	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	c0008	1932	2	0	1	0	0	1	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	c0009	1932	2	0	0	2	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	c0010	1932	1	1	0	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	c0011	1932	1	0	0	0	0	1	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	c0012	1932	1	0	0	1	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	c0013	1932	1	0	0	1	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	c0014	1932	1	0	0	0	0	1	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	c0015	1932	1	1	0	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR3_chr22_29878174_30035868	1/1	c0001	3597	206	34	50	86	11	23	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0002	3597	93	34	14	31	6	8	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0003	3597	11	4	5	1	1	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0004	3597	6	5	1	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0005	3597	3	3	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0006	3597	3	3	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0007	3597	2	2	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0008	3597	1	0	1	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0009	3597	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0010	3597	1	0	0	0	0	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0011	3597	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0012	3597	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0013	3597	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0014	3597	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0015	3597	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0016	3597	1	0	1	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	c0017	3597	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR4_chr17_58484537_58519638	0/1	c0001	3630	129	22	31	63	2	10	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	c0002	3630	94	41	8	26	2	17	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	1/0	c0003	3630	91	20	24	31	6	9	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	c0004	3630	16	0	0	16	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	c0005	3630	4	0	1	0	2	1	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	c0006	3630	3	1	2	0	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	c0007	3630	2	0	0	2	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	c0008	3630	1	1	0	0	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	c0009	3630	1	0	0	1	0	0	copy fasta	MTMR4	chr17	58484537	58519638