JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTMR4_chr17_58484537_58519638	0/0	c0010	3630	1	1	0	0	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	c0011	3630	1	1	0	0	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	c0012	3630	1	0	0	1	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	c0013	3630	1	1	0	0	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	c0014	3630	1	0	0	1	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	c0015	3630	1	0	0	0	0	1	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	c0016	3630	1	0	0	1	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR6_chr13_25241222_25292488	0/1	c0001	1866	111	8	25	61	6	10	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	1/0	c0002	1866	104	40	17	35	0	11	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	c0003	1866	67	20	8	33	0	6	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	c0004	1866	23	2	6	10	2	3	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	c0005	1866	15	0	1	13	0	1	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	c0006	1866	8	8	0	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	c0007	1866	6	5	0	0	0	1	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	c0008	1866	4	3	1	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	c0009	1866	3	0	0	3	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	c0010	1866	2	2	0	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	c0011	1866	1	0	0	1	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	c0012	1866	1	0	1	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	c0013	1866	1	0	1	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR7_chr8_17291794_17418351	0/1	c0001	1983	196	38	43	66	14	34	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0002	1983	57	36	6	14	0	1	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0003	1983	42	3	5	33	0	1	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0004	1983	34	0	9	17	2	6	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0005	1983	5	0	2	0	2	1	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0006	1983	4	0	0	4	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0007	1983	3	3	0	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0008	1983	3	2	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0009	1983	3	0	3	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0010	1983	3	3	0	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0011	1983	2	2	0	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0012	1983	1	0	0	0	0	1	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0013	1983	1	0	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0014	1983	1	1	0	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0015	1983	1	0	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0016	1983	1	1	0	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	1/0	c0017	1983	1	0	0	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0018	1983	1	1	0	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	c0019	1983	1	0	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR8_chrX_64263081_64400452	1/1	c0001	2115	185	64	32	66	5	16	copy fasta	MTMR8	chrX	64263081	64400452
MTMR8_chrX_64263081_64400452	0/0	c0002	2115	1	0	0	1	0	0	copy fasta	MTMR8	chrX	64263081	64400452
MTMR8_chrX_64263081_64400452	0/0	c0003	2115	1	1	0	0	0	0	copy fasta	MTMR8	chrX	64263081	64400452
MTMR8_chrX_64263081_64400452	0/0	c0004	2115	1	1	0	0	0	0	copy fasta	MTMR8	chrX	64263081	64400452
MTMR8_chrX_64263081_64400452	0/0	c0005	2115	1	0	1	0	0	0	copy fasta	MTMR8	chrX	64263081	64400452
MTMR8_chrX_64263081_64400452	0/0	c0006	2114	1	0	0	1	0	0	copy fasta	MTMR8	chrX	64263081	64400452
MTMR9_chr8_11279816_11333146	1/1	c0001	1650	197	51	42	67	11	24	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0002	1650	118	18	21	65	1	13	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0003	1650	11	11	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0004	1650	4	3	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0005	1650	3	3	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146