JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANO7_chr2_241183677_241230976	0/0	c0066	2640	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0067	2640	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0068	2638	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0069	2640	1	0	0	1	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0070	2640	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0071	2640	1	0	0	0	0	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0072	2640	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0073	2640	1	0	1	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0074	2640	1	0	0	0	0	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0075	2640	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0076	2640	1	0	0	0	0	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0077	2640	1	0	1	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0078	2640	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO8_chr19_17318223_17339855	1/1	c0001	3699	163	7	45	87	3	19	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0002	3699	66	48	12	0	3	3	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0003	3699	60	11	11	19	3	16	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0004	3699	48	15	5	24	3	1	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0005	3699	9	3	2	0	4	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0006	3699	3	3	0	0	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0007	3699	2	0	0	0	2	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0008	3699	2	1	1	0	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0009	3699	2	2	0	0	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0010	3699	1	0	1	0	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0011	3699	1	0	0	1	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0012	3699	1	0	1	0	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0013	3699	1	1	0	0	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0014	3699	1	0	0	0	0	1	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0015	3699	1	0	0	1	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0016	3699	1	0	0	1	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0017	3699	1	1	0	0	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	c0018	3699	1	0	0	1	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO9_chr11_412938_447011	0/0	c0001	2349	163	42	33	59	8	21	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0002	2349	55	24	5	20	1	5	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	1/1	c0003	2349	8	0	5	0	1	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0004	2349	7	0	4	0	3	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0005	2349	6	0	5	0	1	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0006	2349	6	6	0	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0007	2349	5	0	0	5	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0008	2349	5	0	3	0	2	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0009	2350	4	0	2	2	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0010	2349	4	0	4	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0011	2349	4	0	3	0	1	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0012	2349	3	3	0	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0013	2349	3	3	0	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0014	2350	3	1	1	1	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0015	2349	2	1	1	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0016	2349	2	0	2	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0017	2349	1	1	0	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0018	2349	1	0	0	1	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0019	2350	1	0	1	0	0	0	copy fasta	ANO9	chr11	412938	447011