JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTMR9_chr8_11279816_11333146	0/0	c0006	1650	2	2	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0007	1650	2	2	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0008	1650	2	0	2	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0009	1650	1	0	0	1	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0010	1650	1	1	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0011	1650	1	1	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0012	1650	1	0	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0013	1650	1	1	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0014	1650	1	1	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0015	1650	1	0	0	1	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0016	1650	1	0	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	c0017	1650	1	0	0	0	0	1	copy fasta	MTMR9	chr8	11279816	11333146
MTNR1A_chr4_186528655_186560567	1/1	c0001	1053	320	70	66	140	10	32	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0002	1053	17	0	2	13	0	2	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0003	1053	16	12	4	0	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0004	1053	7	7	0	0	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0005	1053	7	0	0	7	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0006	1053	5	2	2	0	0	1	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0007	1053	5	0	0	5	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0008	1053	4	0	0	4	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0009	1053	3	0	0	3	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0010	1053	2	0	0	0	0	2	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0011	1053	1	0	0	0	1	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0012	1053	1	0	0	0	0	1	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0013	1053	1	0	1	0	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0014	1053	1	0	0	0	0	1	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0015	1053	1	0	0	0	0	1	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0016	1053	1	0	0	1	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0017	1053	1	0	0	1	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0018	1053	1	0	0	0	1	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0019	1053	1	0	1	0	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	c0020	1053	1	1	0	0	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1B_chr11_92964651_92987782	1/0	c0001	1089	355	65	60	172	15	42	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/1	c0002	1089	21	9	6	0	2	3	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	c0003	1089	17	15	2	0	0	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	c0004	1089	1	0	0	0	0	1	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	c0005	1089	1	0	0	0	1	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	c0006	1089	1	1	0	0	0	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	c0007	1089	1	0	0	1	0	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	c0008	1089	1	0	0	1	0	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	c0009	1089	1	1	0	0	0	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	c0010	1089	1	1	0	0	0	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	c0011	1089	1	0	0	0	0	1	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	c0012	1089	1	0	0	0	0	1	copy fasta	MTNR1B	chr11	92964651	92987782
MTO1_chr6_73456737_73514236	1/0	c0001	2079	308	66	59	142	15	25	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	c0002	2079	80	19	13	41	3	4	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	c0003	2079	2	2	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	c0004	2079	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	c0005	2079	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	c0006	2079	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236