JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTO1_chr6_73456737_73514236	0/1	c0007	2079	1	0	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	c0008	2079	1	0	0	0	0	1	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	c0009	2079	1	1	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTOR_chr1_11101535_11267551	0/0	c0001	7650	73	6	20	33	2	12	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/1	c0002	7650	59	35	9	7	3	4	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0003	7650	37	6	10	10	2	9	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	1/0	c0004	7650	19	16	1	1	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0005	7650	18	0	5	8	0	5	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0006	7650	10	0	0	10	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0007	7650	6	6	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0008	7650	5	5	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0009	7650	4	4	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0010	7650	3	3	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0011	7650	2	0	1	1	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0012	7650	2	2	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0013	7650	1	0	0	0	1	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0014	7650	1	0	0	0	0	1	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0015	7650	1	0	0	1	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0016	7650	1	0	0	0	0	1	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0017	7650	1	1	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0018	7650	1	0	0	1	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0019	7650	1	0	0	1	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0020	7650	1	0	0	1	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0021	7650	1	1	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0022	7650	1	0	0	1	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0023	7650	1	0	0	0	0	1	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0024	7650	1	0	0	1	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0025	7650	1	1	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0026	7650	1	0	0	0	0	1	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0027	7650	1	1	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0028	7650	1	1	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0029	7650	1	1	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	c0030	7650	1	1	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTPAP_chr10_30304801_30354278	1/0	c0001	1749	247	59	46	103	12	26	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/1	c0002	1749	85	10	12	48	6	8	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	c0003	1749	19	17	2	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	c0004	1749	1	0	0	0	0	1	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	c0005	1749	1	0	0	1	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	c0006	1749	1	0	0	1	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	c0007	1749	1	1	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	c0008	1749	1	0	0	1	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	c0009	1749	1	0	0	0	0	1	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	c0010	1749	1	1	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPN_chr7_135921760_135982359	1/1	c0001	357	357	68	53	188	12	34	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	c0002	357	23	12	2	2	1	6	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	c0003	357	6	4	1	0	1	0	copy fasta	MTPN	chr7	135921760	135982359
MTRES1_chr6_107023199_107056586	1/1	c0001	723	398	90	86	164	17	39	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	c0002	723	2	2	0	0	0	0	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	c0003	723	2	0	0	0	0	2	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	c0004	723	1	0	0	1	0	0	copy fasta	MTRES1	chr6	107023199	107056586