JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTRES1_chr6_107023199_107056586	0/0	c0005	723	1	0	0	0	0	1	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	c0006	702	1	0	0	1	0	0	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	c0007	723	1	0	0	0	1	0	copy fasta	MTRES1	chr6	107023199	107056586
MTREX_chr5_55302989_55430579	1/1	c0001	3129	228	49	43	101	10	23	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	c0002	3129	80	27	5	42	2	4	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	c0003	3129	2	0	0	2	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	c0004	3129	2	0	0	2	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	c0005	3129	2	2	0	0	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	c0006	3129	1	0	0	1	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	c0007	3129	1	1	0	0	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	c0008	3129	1	0	0	1	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	c0009	3129	1	0	0	1	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	c0010	3129	1	0	0	0	0	1	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	c0011	3129	1	1	0	0	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTRF1L_chr6_152982362_153007709	0/0	c0001	1143	189	33	36	96	6	18	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	1/0	c0002	1143	144	17	25	81	6	14	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	c0003	1143	55	17	3	24	3	8	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	c0004	1143	30	5	14	7	1	3	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	c0005	1143	26	16	0	10	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	c0006	1143	11	0	1	5	0	5	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	c0007	1143	5	5	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	c0008	1143	2	2	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	c0009	1143	1	1	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	c0010	1143	1	0	0	0	0	1	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	c0011	1143	1	0	0	1	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	c0012	1143	1	0	1	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	c0013	1143	1	0	0	0	0	1	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1_chr13_41211369_41268576	0/1	c0001	1338	175	45	29	85	5	10	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	1/0	c0002	1338	130	23	16	72	4	14	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	c0003	1338	8	5	2	0	1	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	c0004	1338	5	5	0	0	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	c0005	1338	4	2	2	0	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	c0006	1338	3	3	0	0	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	c0007	1338	2	2	0	0	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	c0008	1338	2	0	2	0	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	c0009	1338	1	0	0	1	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	c0010	1338	1	0	1	0	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	c0011	1338	1	1	0	0	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRFR_chr12_123228436_123262960	1/1	c0001	501	249	77	63	60	16	31	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	c0002	501	54	2	5	42	0	5	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	c0003	501	2	0	0	0	0	2	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	c0004	501	1	1	0	0	0	0	copy fasta	MTRFR	chr12	123228436	123262960
MTRR_chr5_7864148_7906113	1/1	c0001	2097	95	5	10	67	1	10	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0002	2097	82	30	19	28	1	4	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0003	2097	73	4	10	45	4	10	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0004	2097	40	5	9	9	5	12	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0005	2097	35	1	6	27	0	1	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0006	2097	31	15	7	4	2	3	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0007	2097	23	1	6	15	0	1	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0008	2097	10	9	1	0	0	0	copy fasta	MTRR	chr5	7864148	7906113