JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTRR_chr5_7864148_7906113	0/0	c0009	2097	6	4	1	0	1	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0010	2097	6	0	0	6	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0011	2097	3	0	0	3	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0012	2097	3	3	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0013	2097	3	3	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0014	2097	2	2	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0015	2097	2	2	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0016	2097	2	0	1	0	0	1	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0017	2097	2	2	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0018	2097	2	2	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0019	2097	1	0	1	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0020	2097	1	1	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0021	2097	1	0	1	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0022	2097	1	0	1	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0023	2097	1	0	0	1	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0024	2097	1	0	0	1	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0025	2097	1	1	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	c0026	2097	1	0	1	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTR_chr1_236790292_236908981	1/1	c0001	3798	107	32	21	35	6	11	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0002	3798	96	12	24	52	1	7	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0003	3798	90	19	16	32	6	17	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0004	3798	28	1	2	25	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0005	3798	8	8	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0006	3798	5	0	0	5	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0007	3798	4	0	3	0	0	1	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0008	3798	4	4	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0009	3798	2	0	0	2	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0010	3798	2	0	0	2	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0011	3798	2	1	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0012	3798	2	0	0	2	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0013	3798	2	0	0	2	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0014	3798	2	0	2	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0015	3798	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0016	3798	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0017	3798	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0018	3798	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0019	3798	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0020	3798	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0021	3798	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0022	3798	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0023	3798	1	0	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0024	3798	1	0	0	0	0	1	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0025	3798	1	0	0	0	0	1	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0026	3798	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0027	3798	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0028	3798	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0029	3798	1	0	0	0	1	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0030	3798	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0031	3798	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	c0032	3798	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981