JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTSS1_chr8_124545784_124733473	1/1	c0001	2268	178	44	29	77	6	20	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0002	2268	37	10	6	13	2	6	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0003	2268	36	13	9	10	2	2	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0004	2268	15	15	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0005	2268	6	2	1	3	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0006	2268	3	3	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0007	2268	2	0	0	0	0	2	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0008	2268	1	1	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0009	2268	1	1	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0010	2268	1	1	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0011	2268	1	0	0	1	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0012	2268	1	0	1	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0013	2268	1	0	0	0	0	1	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0014	2268	1	1	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0015	2268	1	1	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	c0016	2268	1	0	0	0	0	1	copy fasta	MTSS1	chr8	124545784	124733473
MTSS2_chr16_70656204_70691053	1/1	c0001	2244	327	72	69	135	14	35	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0002	2244	30	1	6	20	1	2	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0003	2244	7	7	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0004	2244	6	6	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0005	2245	6	0	2	4	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0006	2244	3	3	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0007	2244	2	0	0	2	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0008	2244	2	0	0	2	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0009	2244	1	0	0	0	0	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0010	2244	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0011	2244	1	0	0	0	0	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0012	2244	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0013	2244	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0014	2244	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0015	2245	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0016	2244	1	0	0	0	0	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0017	2244	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0018	2244	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0019	2244	1	0	0	0	1	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0020	2244	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0021	2244	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0022	2244	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	c0023	2244	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTTP_chr4_99569824_99628997	0/0	c0001	2685	101	26	8	62	0	5	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	1/1	c0002	2685	75	4	20	32	6	11	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0003	2685	66	12	5	48	0	1	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0004	2685	42	5	5	28	0	4	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0005	2685	21	18	1	0	0	2	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0006	2685	18	6	6	1	0	5	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0007	2685	9	4	5	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0008	2685	4	4	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0009	2685	3	0	3	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0010	2685	3	0	1	1	0	1	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0011	2685	3	3	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997