JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTTP_chr4_99569824_99628997	0/0	c0012	2685	2	2	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0013	2685	2	2	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0014	2685	2	1	1	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0015	2685	1	1	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0016	2685	1	0	0	1	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0017	2685	1	0	0	0	0	1	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0018	2685	1	1	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0019	2685	1	1	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0020	2685	1	0	0	0	0	1	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0021	2685	1	1	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0022	2685	1	1	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0023	2685	1	0	0	0	0	1	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0024	2685	1	0	0	1	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0025	2685	1	0	1	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0026	2685	1	0	0	0	0	1	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	c0027	2685	1	0	0	0	0	1	copy fasta	MTTP	chr4	99569824	99628997
MTURN_chr7_30129986_30167762	1/1	c0001	396	349	73	63	165	11	35	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	c0002	396	70	21	16	23	3	7	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	c0003	396	5	4	1	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	c0004	396	1	0	0	1	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	c0005	396	1	0	0	1	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTUS1_chr8_17638802_17806094	0/0	c0001	3813	33	0	2	27	1	3	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0002	3813	23	2	12	5	3	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0003	3813	23	2	4	10	0	7	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0004	3813	20	7	9	3	1	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0005	3813	17	14	2	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0006	3813	13	1	1	11	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0007	3813	11	0	0	9	1	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/1	c0008	3813	9	0	3	5	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0009	3813	8	1	2	4	0	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0010	3813	8	0	1	3	3	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0011	3813	7	2	3	2	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	1/0	c0012	3813	6	5	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0013	3813	6	0	0	6	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0014	3813	5	0	0	3	0	2	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0015	3813	5	0	0	5	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0016	3813	4	1	2	0	1	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0017	3813	4	0	2	2	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0018	3813	4	4	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0019	3813	4	4	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0020	3651	4	1	2	0	0	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0021	3813	4	0	2	1	0	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0022	3813	3	3	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0023	3813	3	0	1	2	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0024	3813	3	1	0	2	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0025	3813	3	1	0	2	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0026	3813	3	0	0	0	0	3	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0027	3813	3	2	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0028	3813	3	3	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0029	3813	3	0	0	3	0	0	copy fasta	MTUS1	chr8	17638802	17806094