JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTUS1_chr8_17638802_17806094	0/0	c0080	3813	1	0	0	0	0	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0081	3813	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0082	3813	1	0	1	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0083	3813	1	0	0	0	0	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0084	3813	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0085	3813	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0086	3813	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0087	3813	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0088	3813	1	0	1	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0089	3813	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0090	3813	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0091	3813	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0092	3813	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0093	3813	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0094	3813	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0095	3813	1	0	1	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0096	3813	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0097	3813	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0098	3813	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0099	3813	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0100	3813	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	c0101	3813	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS2_chr13_28815339_29510947	0/1	c0001	4110	33	10	5	7	4	6	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	1/0	c0002	4110	24	17	4	1	0	1	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0003	4110	5	5	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0004	4110	3	3	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0005	4110	3	3	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0006	4110	3	1	0	1	1	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0007	4110	3	2	1	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0008	4110	2	1	0	1	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0009	4110	2	2	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0010	4110	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0011	4110	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0012	4110	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0013	4110	1	0	1	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0014	4110	1	0	1	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0015	4110	1	0	0	0	1	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0016	4110	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0017	4110	1	0	0	1	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0018	4110	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0019	4110	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0020	4110	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0021	4110	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0022	4110	1	0	0	1	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	c0023	4110	1	0	0	0	0	1	copy fasta	MTUS2	chr13	28815339	29510947
MTX1_chr1_155203695_155218823	1/1	c0001	1401	240	48	44	109	12	25	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	c0002	1401	99	28	16	38	5	12	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	c0003	1401	6	2	2	0	1	1	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	c0004	1401	3	0	3	0	0	0	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	c0005	1401	1	0	1	0	0	0	copy fasta	MTX1	chr1	155203695	155218823