JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTX1_chr1_155203695_155218823	0/0	c0006	1401	1	1	0	0	0	0	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	c0007	1401	1	0	0	1	0	0	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	c0008	1401	1	0	0	1	0	0	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	c0009	1401	1	0	0	1	0	0	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	c0010	1401	1	1	0	0	0	0	copy fasta	MTX1	chr1	155203695	155218823
MTX2_chr2_176264442_176343025	1/1	c0001	792	333	92	66	133	12	28	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	c0002	792	9	0	0	9	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	c0003	792	1	0	0	1	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	c0004	792	1	1	0	0	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	c0005	792	1	0	0	1	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	c0006	792	1	1	0	0	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	c0007	792	1	0	0	1	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	c0008	792	1	0	0	1	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX3_chr5_79971716_79996262	1/1	c0001	939	372	81	64	173	12	40	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	c0002	939	41	2	4	30	1	4	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	c0003	939	25	5	10	3	1	6	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	c0004	939	4	0	0	4	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	c0005	939	2	2	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	c0006	939	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	c0007	939	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MUC12_chr7_100964565_101023936	0/0	c0001	30135	7	0	0	7	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0002	23754	5	0	0	5	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0003	30252	4	0	0	4	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0004	23754	4	0	0	4	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0005	33501	3	0	3	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0006	33384	3	0	3	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0007	23754	3	0	3	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0008	14007	3	0	0	0	0	3	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0009	31326	2	0	2	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0010	36750	2	0	0	0	1	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0011	39999	2	2	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0012	14007	2	2	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0013	14007	2	2	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0014	14007	2	2	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0015	33501	2	0	1	0	1	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0016	33501	2	0	2	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0017	30252	2	0	2	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0018	30252	2	0	0	0	0	2	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0019	30252	2	0	0	2	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0020	27003	2	0	0	2	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0021	26886	2	2	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0022	35442	2	0	0	1	1	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0023	35442	2	0	0	2	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0024	35442	2	0	0	0	0	2	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0025	28944	2	0	2	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0026	33384	2	0	2	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0027	30135	2	1	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0028	26886	2	0	0	2	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0029	36633	2	0	0	0	0	2	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0030	26886	2	2	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936