JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANO9_chr11_412938_447011	0/0	c0020	2349	1	0	1	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0021	2349	1	1	0	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	c0022	2350	1	0	0	0	1	0	copy fasta	ANO9	chr11	412938	447011
ANOS1_chrX_8523874_8737137	0/0	c0001	2043	118	26	20	58	4	10	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	1/1	c0002	2043	98	36	19	27	4	10	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	c0003	2043	3	1	2	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	c0004	2043	3	2	0	0	1	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	c0005	2043	2	0	2	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	c0006	2043	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	c0007	2043	1	0	0	1	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	c0008	2043	1	0	1	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	c0009	2043	1	0	0	1	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	c0010	2043	1	0	1	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	c0011	2043	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	c0012	2043	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANP32A_chr15_68773535_68825895	1/1	c0001	750	349	89	50	172	8	28	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	c0002	750	5	5	0	0	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32B_chr9_97978341_98020943	1/1	c0001	756	306	84	57	113	14	36	copy fasta	ANP32B	chr9	97978341	98020943
ANP32B_chr9_97978341_98020943	0/0	c0002	756	1	0	0	1	0	0	copy fasta	ANP32B	chr9	97978341	98020943
ANP32B_chr9_97978341_98020943	0/0	c0003	756	1	1	0	0	0	0	copy fasta	ANP32B	chr9	97978341	98020943
ANP32B_chr9_97978341_98020943	0/0	c0004	756	1	1	0	0	0	0	copy fasta	ANP32B	chr9	97978341	98020943
ANP32B_chr9_97978341_98020943	0/0	c0005	756	1	0	1	0	0	0	copy fasta	ANP32B	chr9	97978341	98020943
ANP32D_chr12_48467559_48478622	1/1	c0001	396	273	72	59	90	16	34	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/0	c0002	396	154	15	23	106	2	8	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/0	c0003	396	2	2	0	0	0	0	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/0	c0004	396	2	0	2	0	0	0	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/0	c0005	396	1	1	0	0	0	0	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/0	c0006	396	1	1	0	0	0	0	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/0	c0007	396	1	1	0	0	0	0	copy fasta	ANP32D	chr12	48467559	48478622
ANP32E_chr1_150213417_150241112	0/0	c0001	801	149	11	25	91	6	16	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	1/0	c0002	807	128	6	23	76	8	14	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/1	c0003	807	88	77	9	0	0	1	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	c0004	807	1	0	0	1	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	c0005	807	1	0	0	0	0	1	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	c0006	801	1	1	0	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	c0007	807	1	1	0	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	c0008	801	1	0	1	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANPEP_chr15_89779895_89819852	1/0	c0001	2904	86	1	16	43	8	17	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/1	c0002	2904	75	23	13	35	2	1	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	c0003	2904	51	3	15	27	2	4	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	c0004	2904	32	8	6	13	3	2	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	c0005	2904	32	9	1	10	0	12	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	c0006	2904	23	1	3	14	0	5	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	c0007	2904	11	6	0	5	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	c0008	2904	8	3	1	3	1	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	c0009	2904	7	6	1	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	c0010	2904	5	4	1	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	c0011	2904	5	1	3	0	0	1	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	c0012	2904	4	4	0	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	c0013	2904	4	2	2	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852