JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC12_chr7_100964565_101023936	0/0	c0181	30135	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0182	30135	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0183	30135	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0184	33384	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0185	26886	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0186	30135	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0187	30135	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0188	30135	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0189	33384	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0190	33384	1	0	0	0	1	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0191	30135	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0192	30135	1	0	0	0	1	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0193	30135	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0194	26886	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0195	26886	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0196	26886	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0197	30135	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0198	33384	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0199	36633	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0200	30135	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0201	26886	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0202	30135	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0203	28077	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0204	24828	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0205	26886	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0206	34575	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0207	31326	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0208	21579	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0209	15081	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0210	43131	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0211	51687	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0212	46380	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0213	39882	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0214	43131	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0215	39882	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0216	39882	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0217	52878	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0218	50820	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0219	27639	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0220	47247	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0221	31326	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0222	37824	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0223	30135	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0224	26886	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0225	30135	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0226	30135	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0227	35442	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0228	46056	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0229	35442	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0230	41073	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936