JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC12_chr7_100964565_101023936	0/0	c0231	30135	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0232	23754	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0233	27003	1	0	0	0	1	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0234	23754	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0235	27003	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0236	23754	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0237	23754	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0238	27003	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0239	27003	1	0	0	0	1	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0240	27003	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0241	23754	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0242	27003	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0243	23754	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0244	23754	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0245	23754	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0246	23754	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0247	20505	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0248	20505	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0249	23754	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0250	20505	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0251	20505	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0252	23754	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0253	23001	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0254	23754	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0255	23752	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0256	23754	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0257	23754	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0258	33501	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0259	23754	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0260	23754	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0261	23754	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0262	23754	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0263	27003	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0264	17256	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0265	23754	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0266	23754	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0267	33384	1	0	0	0	1	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0268	30134	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0269	33384	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0270	35442	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0271	30135	1	0	1	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0272	33501	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0273	33501	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0274	43248	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0275	39999	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0276	39999	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0277	39999	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0278	43248	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0279	30252	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0280	39999	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936