JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC12_chr7_100964565_101023936	0/0	c0281	43248	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0282	33501	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0283	36750	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0284	33501	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0285	33501	1	1	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	c0286	26886	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC13_chr3_124900442_124939751	1/0	c0001	1539	194	32	24	114	7	16	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0002	1539	106	24	19	51	5	7	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/1	c0003	1539	80	15	20	28	1	15	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0004	1539	32	0	13	12	2	5	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0005	1539	17	14	3	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0006	1539	4	1	3	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0007	1536	4	4	0	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0008	1539	3	0	1	0	1	1	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0009	1539	3	1	1	0	0	1	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0010	1539	2	2	0	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0011	1515	1	0	0	0	0	1	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0012	1539	1	1	0	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0013	1539	1	1	0	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0014	1539	1	0	0	1	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0015	1539	1	0	0	1	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0016	1539	1	0	0	1	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	c0017	1536	1	1	0	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC15_chr11_26554032_26577263	0/1	c0001	1086	208	41	61	76	9	20	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	1/0	c0002	1086	184	32	12	118	4	17	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	c0003	1086	29	16	1	8	0	4	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	c0004	1086	12	0	1	7	1	3	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	c0005	1086	7	5	2	0	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	c0006	1086	7	0	0	7	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	c0007	1086	6	0	0	6	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	c0008	1086	3	0	2	0	1	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	c0009	1086	2	1	0	0	1	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	c0010	1086	2	0	0	2	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	c0011	1086	2	2	0	0	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	c0012	1086	1	0	0	0	0	1	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	c0013	1086	1	1	0	0	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	c0014	1086	1	0	1	0	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	c0015	1086	1	0	0	0	0	1	copy fasta	MUC15	chr11	26554032	26577263
MUC17_chr7_101015081_101063859	0/0	c0001	13482	62	9	21	27	3	2	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0002	13482	37	2	12	11	4	8	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0003	13482	28	1	2	20	0	5	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0004	15960	13	1	0	7	0	5	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0005	13482	12	0	2	9	0	1	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0006	13482	11	0	0	11	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0007	13482	10	1	6	0	2	1	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0008	16314	10	3	2	4	0	1	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0009	15960	8	0	0	8	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0010	13482	8	0	0	7	0	1	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0011	13482	5	5	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	1/1	c0012	13482	5	0	3	0	0	0	copy fasta	MUC17	chr7	101015081	101063859