JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC17_chr7_101015081_101063859	0/0	c0113	16314	1	1	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0114	16314	1	1	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0115	16314	1	1	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0116	16314	1	1	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0117	16314	1	1	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0118	16314	1	1	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0119	16314	1	1	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0120	16314	1	1	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0121	13482	1	0	1	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	c0122	13482	1	0	0	1	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC20_chr3_195715978_195738551	0/0	c0001	1617	29	1	5	21	1	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0002	1662	16	0	0	16	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0003	1617	12	0	1	11	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/1	c0004	1617	8	1	1	4	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0005	1617	8	7	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0006	1617	8	0	4	0	0	4	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0007	1788	7	0	0	7	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0008	1605	5	1	0	3	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0009	1616	5	0	2	2	1	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0010	1788	4	0	3	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0011	1674	4	0	0	4	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0012	1560	4	0	3	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0013	1719	3	0	0	3	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0014	1674	3	2	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0015	1614	2	1	0	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0016	1731	2	0	0	2	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0017	1788	2	2	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0018	1560	2	0	0	2	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0019	1617	2	0	2	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0020	1788	2	0	2	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0021	1674	2	0	0	2	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0022	1617	2	0	0	2	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0023	1617	2	0	0	2	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0024	1560	2	0	0	2	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0025	1617	2	2	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0026	1719	1	0	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0027	1674	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0028	1605	1	0	0	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0029	1719	1	0	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0030	1776	1	0	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0031	1959	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0032	1719	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0033	1947	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0034	1662	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0035	1788	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0036	1557	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0037	1614	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0038	1671	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0039	1671	1	0	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0040	1614	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551