JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC20_chr3_195715978_195738551	0/0	c0041	1674	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0042	1611	1	0	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0043	1668	1	0	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0044	1731	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0045	1617	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0046	1617	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0047	1845	1	0	0	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0048	1788	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0049	1617	1	0	0	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0050	1731	1	0	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0051	2301	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0052	1617	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0053	1617	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0054	1951	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0055	1725	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0056	1674	1	0	0	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0057	1731	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0058	1617	1	0	0	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0059	1617	1	0	0	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0060	1617	1	0	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0061	1617	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0062	1617	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0063	1617	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0064	1674	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0065	1731	1	0	1	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0066	1674	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0067	1617	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0068	1674	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0069	1617	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0070	1560	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0071	1617	1	0	0	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	c0072	1674	1	1	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC21_chr6_30978718_30994903	0/0	c0001	1701	115	30	10	60	3	12	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0002	1701	115	9	11	72	4	19	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0003	1701	40	6	20	8	4	2	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0004	1701	39	2	9	25	1	2	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0005	1881	34	2	6	20	1	5	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0006	1701	28	10	5	8	2	3	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0007	1791	26	17	7	0	2	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0008	1881	9	0	7	0	1	1	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0009	1881	9	0	0	9	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0010	1701	7	6	1	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0011	1701	5	5	0	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0012	1521	5	1	3	1	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0013	1881	3	0	0	0	0	3	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0014	1701	2	0	0	2	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0015	1701	2	2	0	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0016	1701	1	0	1	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0017	1701	1	0	1	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0018	1701	1	1	0	0	0	0	copy fasta	MUC21	chr6	30978718	30994903