JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC21_chr6_30978718_30994903	0/0	c0019	1701	1	1	0	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0020	1881	1	0	0	1	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0021	1656	1	1	0	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0022	1701	1	0	1	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0023	1701	1	1	0	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	c0024	1701	1	0	0	0	0	1	copy fasta	MUC21	chr6	30978718	30994903
MUC22_chr6_31005474_31040402	0/0	c0001	5322	21	0	0	21	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0002	5322	17	0	5	12	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0003	3462	16	0	0	16	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0004	4488	15	1	6	6	2	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0005	5321	15	1	0	14	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0006	5319	14	0	0	14	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0007	5319	13	0	1	12	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0008	5322	12	5	5	0	2	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0009	5322	12	0	0	12	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0010	5322	11	0	4	6	1	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0011	5322	10	1	2	4	1	2	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0012	5322	9	9	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0013	5322	8	0	1	7	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0014	5292	8	0	0	6	0	2	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0015	5322	8	0	0	3	0	5	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0016	5321	8	8	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0017	5322	7	0	5	0	1	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0018	5322	6	5	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0019	5322	5	0	0	3	0	2	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0020	5352	5	0	0	2	1	2	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0021	5322	5	0	0	5	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0022	5322	5	1	4	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0023	5322	5	1	4	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0024	5321	4	0	0	4	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0025	5322	4	4	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0026	5322	4	0	3	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0027	5322	4	0	0	0	0	4	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0028	5292	4	0	2	1	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0029	5322	3	0	0	2	1	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0030	5322	3	2	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0031	5322	3	1	2	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0032	5322	3	1	1	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0033	5322	3	0	0	0	0	3	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0034	5322	3	0	1	0	0	2	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0035	5319	3	0	0	3	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0036	5321	3	0	0	3	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0037	5319	3	0	0	3	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0038	5322	3	0	2	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/1	c0039	5352	3	0	0	1	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0040	5322	2	0	2	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0041	5322	2	0	0	2	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0042	5322	2	2	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0043	5322	2	2	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0044	5352	2	2	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402