JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC22_chr6_31005474_31040402	0/0	c0095	5322	1	0	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0096	5292	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0097	5321	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0098	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0099	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0100	5322	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0101	5352	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0102	5321	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0103	5321	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0104	5321	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0105	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0106	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0107	4458	1	0	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0108	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0109	5321	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0110	5322	1	0	0	0	1	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0111	3729	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0112	5352	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0113	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0114	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0115	4785	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0116	5323	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0117	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0118	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0119	5292	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0120	3432	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0121	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0122	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0123	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0124	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0125	5322	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0126	5322	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0127	5321	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0128	5292	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0129	3432	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0130	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0131	5292	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0132	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0133	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0134	5322	1	0	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0135	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0136	5322	1	0	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0137	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0138	5292	1	0	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0139	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0140	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0141	5321	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0142	5322	1	0	0	0	1	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0143	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0144	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402