JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC22_chr6_31005474_31040402	0/0	c0145	5292	1	0	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0146	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0147	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0148	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0149	5322	1	0	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0150	5321	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0151	5352	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0152	5321	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0153	5321	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0154	5322	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0155	5379	1	0	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0156	5319	1	0	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0157	5319	1	0	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0158	5319	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0159	5322	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0160	5319	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0161	5352	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0162	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0163	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0164	5322	1	0	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0165	5319	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0166	5352	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0167	5292	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0168	5322	1	0	0	0	1	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0169	5352	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0170	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0171	5322	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0172	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0173	5322	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0174	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0175	5382	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0176	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0177	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0178	5322	1	0	1	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0179	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0180	5322	1	0	0	0	1	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0181	5322	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	c0182	5322	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC4_chr3_195741771_195816929	0/0	c0001	15951	15	0	0	15	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0002	23169	6	0	0	6	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0003	15903	5	0	5	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0004	23457	3	0	0	2	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0005	23505	3	0	0	3	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/1	c0006	23457	3	0	0	0	1	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0007	17070	3	0	0	3	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0008	12369	2	0	0	2	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0009	13758	2	0	1	0	1	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0010	20721	2	0	0	0	0	2	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0011	23457	2	0	0	0	0	2	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0012	20094	2	1	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929