JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MUC4_chr3_195741771_195816929	0/0	c0013	22881	2	1	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0014	22833	2	0	2	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0015	23457	2	0	1	0	1	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0016	23457	2	0	2	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0017	23457	2	0	0	2	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0018	23937	2	0	0	2	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0019	15903	2	0	0	0	1	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0020	15903	2	0	2	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0021	15951	2	0	1	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0022	23356	2	2	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0023	17070	2	0	0	2	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0024	16590	2	0	0	0	0	2	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0025	23361	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0026	23457	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0027	23169	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0028	12369	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0029	21875	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0030	20624	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0031	13662	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0032	14046	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0033	13710	1	0	0	0	1	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0034	13950	1	0	0	0	1	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0035	12798	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0036	13710	1	0	0	0	1	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0037	12702	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0038	23457	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0039	23170	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0040	23410	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0041	14430	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0042	23313	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0043	15822	1	0	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0044	23169	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0045	22977	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0046	23410	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0047	23217	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0048	23313	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0049	23265	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0050	22785	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0051	23313	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0052	23313	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0053	23457	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0054	23457	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0055	23457	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0056	23457	1	0	0	0	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0057	22833	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0058	23073	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0059	22785	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0060	22785	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0061	23171	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	c0062	23410	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929